View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_8 (Length: 405)
Name: NF8209_low_8
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 4175188 - 4174786
Alignment:
| Q |
1 |
gtgtgtttggtgttgaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgtcaaatgtgtttaaaca |
100 |
Q |
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| T |
4175188 |
gtgtgtttggtgttgaaatttactcattcaaccgtgattttatt---tttaccgaacttagttgaaaaaacatttggcttgtgtcaaatgtgtttaaaca |
4175092 |
T |
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| Q |
101 |
cgattctaatnnnnnnnn-tatataaagctaagcacatacatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggcca |
199 |
Q |
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| T |
4175091 |
cgattctaataaaaatatatatatgaagctaagcacatatatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggcca |
4174992 |
T |
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| Q |
200 |
atcatgaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtgg |
299 |
Q |
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| T |
4174991 |
atcatgaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtgg |
4174892 |
T |
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| Q |
300 |
atgggattttctgagccaaagtacgttggttattgtgctttccgtggacttgcctcctattcagatggacaaccttttgagccacgggtgaattacatct |
399 |
Q |
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| T |
4174891 |
atgggattttctgagccaaattacgttggttattgtgctttccgtggacttgcctcctattcagatggacaaccttttgagctacgggtgaattacatct |
4174792 |
T |
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| Q |
400 |
ttggaa |
405 |
Q |
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| T |
4174791 |
atggaa |
4174786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 138 - 405
Target Start/End: Complemental strand, 4171065 - 4170791
Alignment:
| Q |
138 |
acatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataa-------tggccaatcatgaagctctggtcctaaaaactattaa |
230 |
Q |
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| T |
4171065 |
acatgattggttgtgaccatgaaaacatactgcacaaaaggatcttacagacataaacattaatagccaattctgaagctttagtcctaaaaagtcttaa |
4170966 |
T |
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| Q |
231 |
caaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtggatgggattttctgagccaaagtacgttggtt |
330 |
Q |
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| T |
4170965 |
caaattgattccatgtataaacagattgtaatagggtgcgacggaattcgatcaccgatagctaagtggatgggattttctgagccaaagttcgttggtc |
4170866 |
T |
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| Q |
331 |
attgtgctttccgtggacttgcctcctattcagatggacaaccttttgagccacgggtgaattacatctttggaa |
405 |
Q |
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| T |
4170865 |
attgtgctttccgtggacttgcctcctattcagacggacaaccttttcaaccacgggtgaattacatctatggaa |
4170791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4171206 - 4171098
Alignment:
| Q |
1 |
gtgtgtttggtgttgaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgt--caaatgtgtttaaa |
98 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||| | || | |||| |||||| ||| ||||||| || ||| ||| |||||||||| |
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| T |
4171206 |
gtgtgtttggtgttgaaagttacttattcaaccatgattttattagtatttacaaactcagttgacaaaacatttggtttctgttccaactgtgtttaaa |
4171107 |
T |
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| Q |
99 |
cacgattct |
107 |
Q |
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| T |
4171106 |
catgattct |
4171098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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