View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8209_low_9 (Length: 381)
Name: NF8209_low_9
Description: NF8209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8209_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 1114910 - 1115271
Alignment:
| Q |
20 |
tctcagagaaaaacattatgaaaacaatggacttcttggtgaaggatgtgggtcttgcaccagaagacattgctacatgccctgggattctgacccgcaa |
119 |
Q |
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| T |
1114910 |
tctcagagaaaaaaattatgaaaacaatggacttcttggtgaaggatgtgggtcttgcaccagaagacattgctacatgccctgggattctgacccgcaa |
1115009 |
T |
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| Q |
120 |
cttggagaagacacttgtccctaaatgtgctgttatcaagattttgaagtcaagaggtttagtaaagagtggtttgcgtgtaagtacctttattatgaca |
219 |
Q |
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| T |
1115010 |
cttggagaagacacttgtccctaaatgtgctgttatcaagattttgaagtcaagaggtttagtaaagagtggtttgcgtgtaagtacctttattatgaca |
1115109 |
T |
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| Q |
220 |
agtgaggaaaagtttgtgcagaaatatgtgaccccatttcagaaagatttgccattgttattagatgcatataaagttcagaaatcagattgatcatttg |
319 |
Q |
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| T |
1115110 |
agtgaggaaaagtttgtgcagaaatatgtgaccccatttcagaaagatttgccattgttattagatgcatataaagttcagaaatcagattgatcatttg |
1115209 |
T |
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| Q |
320 |
aatatgctctatactttgaagatattcagtagttctacctgattgctcatcatttttatgat |
381 |
Q |
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| T |
1115210 |
aatatgctctatactttgaagatattcagtagttctacctgattgctcatcatttttatgat |
1115271 |
T |
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Back To:
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Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 17376887 - 17376596
Alignment:
| Q |
22 |
tcagagaaaaacattatgaaaacaatggacttcttggtgaaggatgtgggtcttgcaccagaagacattgctacatgccctgggattctgacccgcaact |
121 |
Q |
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| T |
17376887 |
tcagaaaaaaagattatgaaaacaatgaacttcttgatgaacgatgtgggtcttccaccacaagacattgtaggaagccctgctgttctgttccgtaact |
17376788 |
T |
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| Q |
122 |
tggagaagacacttgtccctaaatgtgctgttatcaagattttgaagtcaagaggtttagtaaagagtggtttgcgtgtaagtacctttattatgacaag |
221 |
Q |
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| T |
17376787 |
tggagaagacacttattcctagatgtacagttattaagattttgaagtcaacgggtttgataaagagtggtttgcgcataagtacctttatttgcataac |
17376688 |
T |
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| Q |
222 |
tgaggaaaagtttgtgcagaaatatgtgaccccatttcagaaagatttgccattgttattagatgcatataaagttcagaaatcagattgat |
313 |
Q |
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| T |
17376687 |
tgagaaaacatttttggggcgatatgtgaccccatttcggaaagatttaccattgttattggatgcatataaaggtcagaattcagattgat |
17376596 |
T |
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