View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8210_high_2 (Length: 497)
Name: NF8210_high_2
Description: NF8210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8210_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 13860209 - 13860690
Alignment:
| Q |
1 |
taacagaaagtgaaacataattgaataaaaagatctaaatgctatttgaagataattaccattgttagatgatatattatgcaccaattcagctgctcaa |
100 |
Q |
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| T |
13860209 |
taacacaaagtgaaacctaattgaataaaaagatctaaatactatttgaagataattaccattgttagatgatatattatgcaccaattcagctgctcaa |
13860308 |
T |
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| Q |
101 |
acctgaaattccatcaatagaatctaccaaccaacttgaaatattcaatcttcaagcttttttctgactcaatcaacctccaagcttaaataatgttgca |
200 |
Q |
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| T |
13860309 |
acctgaaattccatcaatagaatctaccaaccaacttgaaatattcaatcttcaagcttttttctgactcaatcaacctccaagcttaaataatgttgca |
13860408 |
T |
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| Q |
201 |
atgagtaattttcttgctgatgataacttctcaatatcttaactaaaataaacttgccaataatgttggaaggtaaatgtgaaatatatacgaatagccg |
300 |
Q |
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| T |
13860409 |
atgagtaattttcttgctgatgataacttctcaatatcttaactaaaataaacttgccaataatgttggaaggtaaatgtgaaatatatacgaatagccg |
13860508 |
T |
|
| Q |
301 |
tgggaaaatgtcgttgcagaagaggcttcgcaatcacacaagaagaagaatttccaaccttatgctaacccctcctctgcaactatctcccctgaattat |
400 |
Q |
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| T |
13860509 |
tgggaaaatgtcgttgcagaagaggcttcgcaatcacacaagaagaagaatttccaaccttatgctaacccctcctctgcaactatctcccctgaattat |
13860608 |
T |
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| Q |
401 |
ttccttctttatttgtttctaaggcagaataataatcttcttcttgtttttgtacgttccccaaaaatgtatgtgttatacc |
482 |
Q |
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| T |
13860609 |
ttccttctttatttgtttctaaggcagaataataatcttcttcttgtttttgtacgttccccaaaaatgtatgtgttatacc |
13860690 |
T |
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