View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8210_high_3 (Length: 313)
Name: NF8210_high_3
Description: NF8210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8210_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 34846847 - 34846566
Alignment:
| Q |
16 |
catgtgtttataagtgagaacaatcttctctttacgaaccagttttataaagatgaatcagactacgatatctataaaatttcttactgcttagaccaat |
115 |
Q |
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| T |
34846847 |
catgtgtttataagtgagagcaatcttctctttacgaaccagttttataaagatgagtcagactacgatatctataaaatttctcacgacttagaccaat |
34846748 |
T |
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| Q |
116 |
cgttcttattaaagtatgcatgtatatatgagcatattttaagatgcctcgaggaattagtccttactctagttaggatcaatcggtcaaatatacaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34846747 |
cgttcttattaaagtatgcatgtatatatgagtatattttaagatgcctcgaggaattagtccttactctagttaggatcaatcggtcaaatatacaaag |
34846648 |
T |
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| Q |
216 |
aagactttacattcgtaaatattataaatactacatgttttcaccaaaataaataaattataaacacacgtacctatgaatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34846647 |
aagactttacattcgtaaatattataaatactacatgttttcaccaaaataaataaattataaacacacgttcctatgaatt |
34846566 |
T |
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