View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8210_low_2 (Length: 725)
Name: NF8210_low_2
Description: NF8210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8210_low_2 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (3 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 172831 - 173495
Alignment:
| Q |
1 |
tttgtttcgatttttaaagataatggatagttaaacaatttgagttagacctacnnnnnnnnataaattttggcatattatgtgttgaagagttaaaagg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||| | || ||||||||||||||||||||| ||||| |||||| |
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| T |
172831 |
tttgtttcgatttttaaagataatggata-ttaaacaatttcagttagacc--cttttttttatggattttggcatattatgtgttggagagtcaaaagg |
172927 |
T |
|
| Q |
101 |
attaactagataacctcattgaaattgaatttgtacttctatttttgtcttgctgcacccgtattgaattttggcatccgattaagaagtatgtcaagcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||| |
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| T |
172928 |
attaactagataacctcattgaaattgaatttgtacttctgtttttgtcttgttgcatccgtattgaattttggcatccgattaagaagtttgccaagcg |
173027 |
T |
|
| Q |
201 |
tttatatggtcaaacagataggtgaagtatcatttgaattgggactacctccgagcagtagaatccatcatgtatttcatgtgtctcagctgaagaaggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
173028 |
tttatatggtcaaacagataggtgaagtatcatttgaattgggactacctccgggcagtagaatccatcatgtatttcatgtgtctcagctgaagaaggt |
173127 |
T |
|
| Q |
301 |
tttatacggcttctgccaaattctgcagaagctaattcacttctgattcagcctttagaagttctggatcagaacttgattagtctgctcgagtgtgtag |
400 |
Q |
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| T |
173128 |
tttatacggcttctgccaaattctgcagaagctaattcacttctgattcagcctttagaagttctggatcagaacttgattagtctgctcgggtgtgtag |
173227 |
T |
|
| Q |
401 |
gagagcctgattctggttttgttgtggagggtctgaggaggatttattgcacaatgcattgggtgcagagctgaaatattaaagcaccacctctttgcaa |
500 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |
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| T |
173228 |
gagagcctgattctggttttgttgtggagggcctgaggaggatttattgcacaatgtagtgggtgcagaactgaaatattaaagcaccacctctttgcaa |
173327 |
T |
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| Q |
501 |
gaggcagctttggtgagaaattattgtagtgagagtatgaattgaggcatgtatttataac-----------aatctgaacatttcaaataactccacaa |
589 |
Q |
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| T |
173328 |
gaggcagctttggtgagaaattcttgtagtgagagtatgaattgaggcatgtatttataaccatctgaattgaatttgaacatttcaaataactcgacaa |
173427 |
T |
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| Q |
590 |
gtttgttatctgaatgtaacaatgatgttaatatgaagggaaaagaggcctgtgataaaatagaaaca |
657 |
Q |
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| T |
173428 |
gtttgttatctgaatgtaacaatgatgttaatatcaagtgaaaagaggcccgtggtgaaatagaaaca |
173495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 18858 - 19004
Alignment:
| Q |
66 |
aattttggcatattatgtgttgaagagttaaaaggattaactagataacctcattgaaattgaatttgtacttctatttttgtcttgctgcacccgtatt |
165 |
Q |
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||||||||||||||||| | | ||||| ||||||||||||| |||||| ||||||||||||||||| || |||| |||||||||||||||||| ||||| |
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| T |
18858 |
aattttggcatattatgaataggagagtcaaaaggattaactggataacatcattgaaattgaatttttatttctgtttttgtcttgctgcacctgtatt |
18957 |
T |
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| Q |
166 |
gaattt-tggcatccgattaagaagtatgtcaagcgtttatatggtc |
211 |
Q |
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|||||| ||||||||||||||||||| || ||| |||| ||||||| |
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| T |
18958 |
gaatttatggcatccgattaagaagtttgccaattgtttctatggtc |
19004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 2255 - 2324
Alignment:
| Q |
440 |
ggatttattgcacaatgcattgggtgcagagctgaaatattaaagcaccacctctttgcaagaggcagctttg |
512 |
Q |
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| T |
2255 |
ggatttattgcacaatgtagtgggtgcgtagctgaaatattaaag---cacctctttgcaagaggccgctttg |
2324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 608
Target Start/End: Original strand, 2769 - 2811
Alignment:
| Q |
566 |
tgaacatttcaaataactccacaagtttgttatctgaatgtaa |
608 |
Q |
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| T |
2769 |
tgaacatttcgaagaactccacaagtttgttatctaaatgtaa |
2811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 30099 - 30164
Alignment:
| Q |
229 |
atcatttgaattgggactacctccgagcagtagaatccatcatgtatttcatgtgtctcagctgaa |
294 |
Q |
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| T |
30099 |
atcatttgaattgggactgcctccgggcagtagaatccatcttatatttcatgtgtctcagctgaa |
30164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 566 - 623
Target Start/End: Original strand, 31094072 - 31094129
Alignment:
| Q |
566 |
tgaacatttcaaataactccacaagtttgttatctgaatgtaacaatgatgttaatat |
623 |
Q |
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| T |
31094072 |
tgaacatttcaaacaactccacaagtttgttatctaaatgtaacaatgatgttaatat |
31094129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 31044545 - 31044437
Alignment:
| Q |
66 |
aattttggcatattatgtgttgaagagttaaaaggattaactagataacctcattgaaattgaatttgtacttctatttttgtcttgctgcacccgtatt |
165 |
Q |
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||||||||||||||||| ||| ||||| |||||||| |||| |||||| |||||||||||| |||| ||||||| |||| |||||||| ||||||| |
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| T |
31044545 |
aattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgtatt |
31044446 |
T |
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| Q |
166 |
gaattttgg |
174 |
Q |
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||||||||| |
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| T |
31044445 |
gaattttgg |
31044437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 566 - 605
Target Start/End: Complemental strand, 31051230 - 31051191
Alignment:
| Q |
566 |
tgaacatttcaaataactccacaagtttgttatctgaatg |
605 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
31051230 |
tgaacatttcaaataactccacaagtttgttatctaaatg |
31051191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 508
Target Start/End: Original strand, 31093573 - 31093652
Alignment:
| Q |
426 |
ggagggtctgaggaggatttattgcacaatgcattgggtgcagagctgaaatattaaagcaccacctctttgcaagaggcagc |
508 |
Q |
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| T |
31093573 |
ggagggcctggggcggatttattgcacaatgtagtgggtgcgtagttaaaatattaaag---cacctctttgcaagaggcagc |
31093652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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