View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8210_low_3 (Length: 416)
Name: NF8210_low_3
Description: NF8210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8210_low_3 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 64 - 394
Target Start/End: Complemental strand, 172810 - 172479
Alignment:
| Q |
64 |
gaatgaagaatatttaatcattcatgatctatatggacataggctaaaatgtcgaaaaatgcttgatatcatggacaaacctttaagtaagcttgacaaa |
163 |
Q |
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| T |
172810 |
gaatgaagaatatttaatcattcatgatctatatggacataggctaaaatgtcgaaaaatgcttgatatcatggacaaacctttaagtaagcttgacaaa |
172711 |
T |
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| Q |
164 |
tcatttttgttcttttaagtttatgcagccctaacatgtcttcaatttttctttgcagtttatgcaacatttctattgtattataagccttcagtttaga |
263 |
Q |
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| T |
172710 |
tcatttttgttcttttaagtttatgcagccctaacatgtcttcaatttttctttgcagtttatgcaacatttttattgtattataagccttcagtttaga |
172611 |
T |
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| Q |
264 |
tccttactgcgaaaaagaaatacaatggtgattaacattgctgagatataatat-ccttagtgaaacgatacctcggaaaaatcaaaagctcaatcagca |
362 |
Q |
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| T |
172610 |
tccttactgcgaaaaagaaatacaatggtgattcacattgctgagatataatatacctcagtgaaacgatacctcggaaaaatcaaaagctcaatcggca |
172511 |
T |
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| Q |
363 |
cgaacatgcatgggtaaacatgaatcatgtta |
394 |
Q |
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| T |
172510 |
cgaacaggcatgggtaaacatgaatcatgtta |
172479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 183 - 370
Target Start/End: Complemental strand, 18604 - 18421
Alignment:
| Q |
183 |
tttatgcagccctaacatgtcttcaatttttctttgcagtttatgcaacatttctattgtattataagccttcagtttagatccttactgcgaaaaagaa |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||| | |
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| T |
18604 |
tttatgcagccctaacatgtcttcaatttttctttgcagtttatgcaacatttttgttgtattatatggcttcagtttagatccttactgcgaaaaagca |
18505 |
T |
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| Q |
283 |
atacaatggtgattaacattgctgagatataatatccttagtgaaacgatacctcggaaaaatcaaaagctcaatcagcacgaacatg |
370 |
Q |
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| T |
18504 |
acacaatggtgatacacattgctgagatata----cctcagtgaaacgaaacctcggaaaaatcaaaagctcaatcagcacgaacatg |
18421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 210 - 369
Target Start/End: Original strand, 31044754 - 31044909
Alignment:
| Q |
210 |
ttttctttgcagtttatgcaacatttctattgtattataagccttcagtttagatccttactgcgaaaaagaaatacaatggtgattaacattgctgaga |
309 |
Q |
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| T |
31044754 |
ttttcatttcagtttatccaacatttttattgtattatatggcttcagtttagatccgtactgcgaaaaagcaacacaatggtgaatcacattgctgaga |
31044853 |
T |
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| Q |
310 |
tataatatccttagtgaaacgatacctcggaaaaatcaaaagctcaatcagcacgaacat |
369 |
Q |
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| T |
31044854 |
tat----gcctcagtgaaacgaaacctcagaaaaatcaaaagctcaatcagcacgaacat |
31044909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 21641933 - 21641989
Alignment:
| Q |
187 |
tgcagccctaacatgtcttcaatttttctttgcagtttatgcaacatttctattgta |
243 |
Q |
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| T |
21641933 |
tgcagcactaacatgtcttcaatttttctttgcagtctatgcaacatttttattgta |
21641989 |
T |
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