View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8210_low_4 (Length: 338)
Name: NF8210_low_4
Description: NF8210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8210_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 1614646 - 1614870
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1614646 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
1614745 |
T |
|
| Q |
110 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatagttgacactacataaaatttaaatgaacattataaaaagacaacatgaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1614746 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatagttgacaccacataaaatttaaatgaacattataaaaagacaacatgaaat |
1614845 |
T |
|
| Q |
210 |
acagtagttatgaagtagcagtaat |
234 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
1614846 |
acaatagttatgaagtagcagtaat |
1614870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 24456334 - 24456222
Alignment:
| Q |
122 |
taaggtttttaatttatttttgtaaggattacctatagttgacactacataaaatttaaatgaacattataaaaagacaacatgaaatacagtagttatg |
221 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456334 |
taaggttgttaacttatttttgtaaggattacctatagttgacactacataaaatttaaatgaacattataaaaagacaacatgaaatacagtagttatg |
24456235 |
T |
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| Q |
222 |
aagtagcagtaat |
234 |
Q |
| |
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|||||||||||| |
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| T |
24456234 |
cagtagcagtaat |
24456222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 24456391 - 24456341
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatg |
61 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||| |||| |
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| T |
24456391 |
ttatactcacaaattaagcatgcaattggcag-cccaagcagttcttgaatg |
24456341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 234
Target Start/End: Original strand, 24786880 - 24787103
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
109 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||| ||||| |
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| T |
24786880 |
ttatactcacaaataaagcatgcaattagcagccccaagcagttcttcaatagccatgtactatgtcctaaatttgctttcttgacgtgttgctcacaa- |
24786978 |
T |
|
| Q |
110 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatagttgacactacataaaatttaaatgaacattataaaaagacaacatgaaat |
209 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24786979 |
caattaacccactaaggtttttaacttatttttgtaaggattacctatacttgacactacataaaatttaaatgaacattataaaaagacaacatgaaat |
24787078 |
T |
|
| Q |
210 |
acagtagttatgaagtagcagtaat |
234 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
24787079 |
acagtagttatgaagtagcagtaat |
24787103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 43228683 - 43228458
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
109 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||| ||| || |
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| T |
43228683 |
ttatactcacaaattaagcatgcgattggcagccccaagcagttcttcaatggccatgtactatgtcctaaatttgcttccttgacatgctgctcac-aa |
43228585 |
T |
|
| Q |
110 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatag--ttgacactacataaaatttaaatgaacattataaaaagac-aacatga |
206 |
Q |
| |
|
||| ||| |||||||||| ||| ||||||||||||||||||||| ||| |||| |||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
43228584 |
caactaatccactaaggtccataacttatttttgtaaggattacctgtagttttgagactacacaaaatttatatgaacattataaaaagacaaacatga |
43228485 |
T |
|
| Q |
207 |
aatacagtagttatgaagtagcagtaa |
233 |
Q |
| |
|
|||||||||||||| ||||||||||| |
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| T |
43228484 |
catacagtagttatgcagtagcagtaa |
43228458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 14839507 - 14839357
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
109 |
Q |
| |
|
||||||| | ||||| ||||||||||| ||||||||||||||||||||||| | ||||| ||||| || |||||||| ||||| ||| ||| ||| || |
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| T |
14839507 |
ttatacttataaatttagcatgcaattgacagccccaagcagttcttcaatgatcatgtaccatgtcttaaatttgcttccttgaaatgctgctcac-aa |
14839409 |
T |
|
| Q |
110 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatagtt |
161 |
Q |
| |
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||| ||| ||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
14839408 |
caactaatccactaaggttcataacagatttttgtaaggattacatatagtt |
14839357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 27962183 - 27962333
Alignment:
| Q |
10 |
ttatactcacaaattaagcatgcaattagcagccccaagcagttcttcaatggccgtgtactatgtcctagatttgctttcttgacatgttgcacacaaa |
109 |
Q |
| |
|
||||||| | ||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||| || |||||||| ||||| ||| ||| ||| || |
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| T |
27962183 |
ttatacttataaatttagcatgcaattgacagccccaagcagttcttcaatgatcatgtactatgtcttaaatttgcttccttgaaatgctgctcac-aa |
27962281 |
T |
|
| Q |
110 |
caattaacccactaaggtttttaatttatttttgtaaggattacctatagtt |
161 |
Q |
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||| ||| ||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
27962282 |
caactaatccactaaggttcataacagatttttgtaaggattacatatagtt |
27962333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 37359258 - 37359319
Alignment:
| Q |
160 |
ttgacactacataaaatttaaatgaacattataaaaagacaacatgaaatacagtagttatg |
221 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||||||| |||| | | ||||||||||||||||| |
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|
| T |
37359258 |
ttgagactacataacattaatatgaacattataaagagactaaaggaaatacagtagttatg |
37359319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 25433915 - 25433828
Alignment:
| Q |
135 |
ttatttttgtaaggattacctatagtt--gacactacataaaatttaaatgaacattataaaaagacaacatgaaatacagtagttat |
220 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||| | || |||||||||||||||| ||||||||| ||||| | ||||||| |
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| T |
25433915 |
ttatttttgtaaggattacctatagttttgaaactacatacatttcaaatgaacattataaatagacaacataaaatataatagttat |
25433828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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