View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_high_16 (Length: 266)
Name: NF8211_high_16
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 50750747 - 50750977
Alignment:
| Q |
21 |
agaacgagaaatgtttcttacgagctagattgaccagagtgagtccaccaatgagctgaatcaaatgcaagaatatcaactcctttccaataccttgcat |
120 |
Q |
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| T |
50750747 |
agaacgagaaatgtttcttacgagctagattgaccagagtgagtccaccaatgagctgaatcaaatgcaagaatatcaactcctttccaataccttgcat |
50750846 |
T |
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| Q |
121 |
tctcttcaatcaaatccaaatgtagaattctcttattgttagaccctttcttcagttctaccaatagtggtgcccagaagaattcaattgatgtctcaaa |
220 |
Q |
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| T |
50750847 |
tctcttcaatcaaatccaaatgtagaattctcttattgttagaccctttcttcagttctaccaatagtggtgcccagaagaattcaattgatgtctcaaa |
50750946 |
T |
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| Q |
221 |
atcctgtaataagtgaacaacatgtaagtaa |
251 |
Q |
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| T |
50750947 |
atcctgtaataagtgaacaacatgtaagtaa |
50750977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 19412797 - 19412965
Alignment:
| Q |
57 |
gagtgagtccaccaatgagctgaatcaaatgcaagaatatcaactcctttccaataccttgcattctcttcaatcaaatccaaatgtagaattctcttat |
156 |
Q |
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| T |
19412797 |
gagtgagtccaccactgagctgaatcaaatacaaggatatcaactcctctccaatacttcgcattctcctcaatcaaatccaaatgtaagactctcttgt |
19412896 |
T |
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| Q |
157 |
tgttagaccctttcttcagttctaccaatagtggtgcccagaagaattcaattgatgtctcaaaatcct |
225 |
Q |
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| T |
19412897 |
tttctggacttttcttcagttccactaacagtggtgcccaaagaaactcaattgatgtctcaaaatcct |
19412965 |
T |
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