View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8211_high_20 (Length: 233)

Name: NF8211_high_20
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8211_high_20
NF8211_high_20
[»] chr7 (17 HSPs)
chr7 (9-213)||(10252093-10252294)
chr7 (67-208)||(26193634-26193774)
chr7 (68-178)||(19295506-19295615)
chr7 (68-212)||(24814814-24814957)
chr7 (68-178)||(19353870-19353979)
chr7 (68-170)||(9567653-9567754)
chr7 (68-138)||(15711755-15711825)
chr7 (68-165)||(23174047-23174143)
chr7 (93-164)||(14688081-14688151)
chr7 (68-170)||(4793893-4793994)
chr7 (136-212)||(15709082-15709158)
chr7 (68-112)||(10661727-10661771)
chr7 (97-170)||(4541988-4542060)
chr7 (125-166)||(12326579-12326619)
chr7 (136-173)||(21261190-21261227)
chr7 (115-167)||(10661628-10661679)
chr7 (83-147)||(23297312-23297375)
[»] chr2 (11 HSPs)
chr2 (68-212)||(36397788-36397928)
chr2 (68-212)||(24311148-24311291)
chr2 (68-212)||(31588201-31588344)
chr2 (69-212)||(24312941-24313083)
chr2 (91-178)||(27111787-27111873)
chr2 (68-178)||(27108198-27108307)
chr2 (136-208)||(26859352-26859424)
chr2 (83-178)||(19197643-19197737)
chr2 (83-146)||(20645604-20645666)
chr2 (83-178)||(25347897-25347991)
chr2 (116-173)||(21249541-21249597)
[»] chr5 (8 HSPs)
chr5 (68-212)||(22183613-22183756)
chr5 (75-209)||(24118265-24118398)
chr5 (68-178)||(17660759-17660868)
chr5 (67-169)||(20127703-20127804)
chr5 (91-170)||(20740301-20740379)
chr5 (116-167)||(23624607-23624657)
chr5 (116-167)||(30605034-30605084)
chr5 (116-166)||(22082034-22082083)
[»] chr3 (15 HSPs)
chr3 (69-212)||(18477815-18477954)
chr3 (67-208)||(8225808-8225945)
chr3 (68-212)||(31650405-31650548)
chr3 (68-212)||(214390-214531)
chr3 (68-167)||(17042055-17042153)
chr3 (68-203)||(25020126-25020260)
chr3 (68-212)||(15674133-15674276)
chr3 (68-212)||(11657020-11657160)
chr3 (68-169)||(7495243-7495343)
chr3 (75-170)||(13920266-13920360)
chr3 (68-118)||(6578798-6578848)
chr3 (68-178)||(3444349-3444457)
chr3 (68-170)||(7478480-7478581)
chr3 (97-170)||(13914541-13914613)
chr3 (136-173)||(3551841-3551878)
[»] chr4 (18 HSPs)
chr4 (68-205)||(10682975-10683108)
chr4 (68-205)||(10896615-10896748)
chr4 (68-212)||(10723008-10723148)
chr4 (68-212)||(10936777-10936917)
chr4 (68-212)||(49974969-49975111)
chr4 (68-205)||(10718203-10718335)
chr4 (68-205)||(10931972-10932104)
chr4 (68-212)||(16616667-16616809)
chr4 (70-193)||(21479139-21479261)
chr4 (68-160)||(33746693-33746784)
chr4 (68-175)||(10197541-10197649)
chr4 (71-162)||(33744242-33744332)
chr4 (68-153)||(16654590-16654674)
chr4 (83-146)||(18006065-18006127)
chr4 (68-170)||(31971677-31971778)
chr4 (71-118)||(9069804-9069851)
chr4 (70-167)||(2680501-2680597)
chr4 (136-208)||(16654697-16654769)
[»] chr6 (16 HSPs)
chr6 (68-212)||(28622904-28623047)
chr6 (68-212)||(28624532-28624675)
chr6 (68-190)||(34639504-34639622)
chr6 (68-202)||(21316890-21317021)
chr6 (82-212)||(20559317-20559443)
chr6 (68-167)||(24542420-24542518)
chr6 (83-178)||(18152069-18152163)
chr6 (68-129)||(20764257-20764319)
chr6 (116-173)||(15930191-15930247)
chr6 (68-166)||(16308665-16308763)
chr6 (116-167)||(12385201-12385251)
chr6 (116-167)||(19077909-19077959)
chr6 (125-167)||(13196090-13196131)
chr6 (116-173)||(19598441-19598497)
chr6 (116-173)||(23882041-23882097)
chr6 (125-165)||(25806176-25806215)
[»] chr1 (10 HSPs)
chr1 (66-214)||(8282639-8282786)
chr1 (68-190)||(22347921-22348039)
chr1 (68-167)||(12753826-12753924)
chr1 (68-178)||(18379388-18379497)
chr1 (137-212)||(51471454-51471529)
chr1 (68-117)||(18389410-18389459)
chr1 (68-118)||(17355098-17355149)
chr1 (116-173)||(10339502-10339558)
chr1 (136-213)||(15914806-15914883)
chr1 (68-153)||(51471346-51471430)
[»] scaffold0008 (2 HSPs)
scaffold0008 (68-212)||(41333-41478)
scaffold0008 (68-212)||(36275-36421)
[»] scaffold0064 (2 HSPs)
scaffold0064 (68-192)||(52237-52360)
scaffold0064 (100-188)||(45295-45382)
[»] scaffold0520 (2 HSPs)
scaffold0520 (70-211)||(5689-5829)
scaffold0520 (100-211)||(11944-12054)
[»] scaffold0034 (1 HSPs)
scaffold0034 (68-170)||(50205-50306)
[»] chr8 (10 HSPs)
chr8 (101-212)||(23863622-23863732)
chr8 (69-120)||(23867572-23867623)
chr8 (73-132)||(24849465-24849524)
chr8 (68-118)||(9997356-9997406)
chr8 (83-153)||(12813881-12813950)
chr8 (85-170)||(12376205-12376289)
chr8 (116-173)||(18622421-18622477)
chr8 (136-212)||(12813973-12814049)
chr8 (104-167)||(23250483-23250545)
chr8 (136-165)||(26537055-26537084)
[»] scaffold0480 (1 HSPs)
scaffold0480 (97-170)||(11943-12015)
[»] scaffold1001 (2 HSPs)
scaffold1001 (68-118)||(822-872)
scaffold1001 (116-167)||(728-778)
[»] scaffold0505 (1 HSPs)
scaffold0505 (82-146)||(9310-9373)
[»] scaffold0423 (1 HSPs)
scaffold0423 (68-146)||(14348-14425)
[»] scaffold0129 (1 HSPs)
scaffold0129 (125-167)||(16271-16312)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 10252294 - 10252093
Alignment:
Q  9 gatcctctcgtgtagtttaagactgcaggcccnnnnnnnngtaacttgggaaattcaagtgttgggtatttgagtattggcctcattattgctaaaacaa 108  Q
    |||||||||||||||||||||||| |||||||        ||||||||||||||||||||||| |||||||||||||||  |||||| ||| ||||| ||    
T  10252294 gatcctctcgtgtagtttaagactacaggccctttttt--gtaacttgggaaattcaagtgttcggtatttgagtattgaactcattgttgataaaataa 10252197  T
Q  109 atactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaa 208  Q
    ||| ||||||||||| |||||||||| |||||||| ||||||| ||||||||||||  ||||||||||||||||| |||| || ||||||||||||||||    
T  10252196 atattcatgtatgatgttggatacga-tgttccaatatcatggtacggttcagtgtatcctgtttatgtggtttgatttatgcgagttttatcttattaa 10252098  T
Q  209 ggaat 213  Q
    |||||    
T  10252097 ggaat 10252093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 26193634 - 26193774
Alignment:
Q  67 gtgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgc 166  Q
    |||||||||||||||| ||| |  ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||| || ||||    
T  26193634 gtgttgggtatttgagcattaggttcattgttgctaaaacaaatactcatgtatgatgttggatacgat-gttccaacatcttggcatggtttagcgtgc 26193732  T
Q  167 cctgtttatgtggtttggtttacgcaagttttatcttattaa 208  Q
     |||||||||||| ||||||||||||||||||||||||||||    
T  26193733 tctgtttatgtggcttggtttacgcaagttttatcttattaa 26193774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 19295615 - 19295506
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |    
T  19295615 tgttggatatttgtgtgttggcttcattattgctaaaacaaatactcatgtatgatgttggatacga-tgttccaacatcttggcacggttcagtgtgtc 19295517  T
Q  168 ctgtttatgtg 178  Q
    |||||||||||    
T  19295516 ctgtttatgtg 19295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 24814957 - 24814814
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| || | ||||||| ||||||| |||||||||||    
T  24814957 tgttgggtattttagtattggcttcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgcttcaacatcttggcacgattcagtgtgcc 24814859  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||| ||||| || |||| ||  |  |||||||| ||||||||    
T  24814858 ctgtttgtgtggcttagttttcgtgaactttatctttttaaggaa 24814814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 19353979 - 19353870
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||||  ||||||| |||||| |||||||||||||| ||||| |||||||||||||||| |||||||||||  |||||||||||||||||||    
T  19353979 tgttggatatttgtatattggcttcattactgctaaaacaaatattcatgcatgatattggatacga-tgttccaacatgttggcacggttcagtgtgcc 19353881  T
Q  168 ctgtttatgtg 178  Q
    || ||||||||    
T  19353880 ctttttatgtg 19353870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 9567754 - 9567653
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||||||| | ||||||||||||||| |||||| |||| |||||||||| |||||||||||| | |||| ||||||||||||    
T  9567754 tgttggatatttgtgtgttggcctcacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttccaacatcctagcacagttcagtgtgcc 9567656  T
Q  168 ctg 170  Q
    |||    
T  9567655 ctg 9567653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 15711825 - 15711755
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgt 138  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  15711825 tgttgggtatttgtgtattggcttcattattgctaaaacaaatattcatgtttgatgttggatacgattgt 15711755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 23174047 - 23174143
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtg 165  Q
    |||||||||||||| ||||| | ||||| ||| ||||||||||||||||||||||| |||||||| | ||||| |||||| || ||| ||||||||||    
T  23174047 tgttgggtatttgattattgacttcattgttggtaaaacaaatactcatgtatgatgttggatac-aatgttctaacatcttgacacagttcagtgtg 23174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 14688151 - 14688081
Alignment:
Q  93 attattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgt 164  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||  ||||||||||||||||    
T  14688151 attattgctaaaacaaatattcatgcatgatgttggatacga-tgttccaacatgttggcacggttcagtgt 14688081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 4793893 - 4793994
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| ||| | ||||||||||||||| |||||| |||| |||||||||| |||||||||||| | ||||  |||||||||||    
T  4793893 tgttggatatttgtgtgttggcttcacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttccaacatcgtagcacatttcagtgtgcc 4793991  T
Q  168 ctg 170  Q
    |||    
T  4793992 ctg 4793994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 15709158 - 15709082
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| ||||||||||||||||||||||||| | ||| ||||||  | | ||||||||||| ||||||||    
T  15709158 tgttccaacatcctggcacggttcagtgtgccctgtttgtatggcttggttatctcgagttttatctttttaaggaa 15709082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 10661771 - 10661727
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatac 112  Q
    |||||||||||||||||||||| || || ||||||||||||||||    
T  10661771 tgttgggtatttgagtattggcttcgttgttgctaaaacaaatac 10661727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 4541988 - 4542060
Alignment:
Q  97 ttgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    ||||||||||||||| ||| || |||| ||||| || || ||||||||||| ||||| ||||||||||| ||||    
T  4541988 ttgctaaaacaaatattcaagtgtgatgttggacaccat-gttccaacatcctggcatggttcagtgtgtcctg 4542060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 12326619 - 12326579
Alignment:
Q  125 ttggatacgattgttccaacatcatggcacggttcagtgtgc 166  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  12326619 ttggatacgat-gttccaacatcctggcacggttcagtgtgc 12326579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 21261227 - 21261190
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  21261227 tgttccaacatcctggcacggttcagtgtgccttgttt 21261190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 10661679 - 10661628
Alignment:
Q  115 atgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||| ||| ||||||||||| ||||||||||| | |||||||||||||||||    
T  10661679 atgtaagatgttggatacgat-gttccaacatcctagcacggttcagtgtgcc 10661628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 23297375 - 23297312
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatc 147  Q
    ||||||| ||||||||||||||||||||||||  || |||| ||| ||| | |||||||||||||    
T  23297375 tattggcttcattattgctaaaacaaatactctagtttgatgttgcatatg-ttgttccaacatc 23297312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 36397788 - 36397928
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  36397788 tgttgggtatttgggtattggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgcc 36397883  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  36397884 ctgtttatgtggcttggtttacgcaatctttatcttattaaggaa 36397928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 24311148 - 24311291
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||    
T  24311148 tgttgagtatttgagtattggcttcattgttgctaaaacaaatactcatgtatgatgttggatac-aatgttccaacatcctggcacggttcagtgtgcc 24311246  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    || ||| ||||| ||||||| ||  ||||||||||| ||||||||    
T  24311247 ctatttgtgtggcttggttttcgtgagttttatctttttaaggaa 24311291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 31588344 - 31588201
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||  | |||||||||||| || ||||||||||||||||    
T  31588344 tgttaggtatttgagtattgacctcattgttgctaaaacaaatactcatgtatgatgttggata-taatgttccaacatcttgtcacggttcagtgtgcc 31588246  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||  |||||||||||  | |||||||| ||||||||    
T  31588245 ctgtttatgtgccttggtttacgcgtgctttatctttttaaggaa 31588201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 24312941 - 24313083
Alignment:
Q  69 gttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccc 168  Q
    ||||||||||||||||||||  ||||| ||||||| ||||||||||||||||||| |||||||| | |||||||| ||| |||||||||||| |||||||    
T  24312941 gttgggtatttgagtattggattcattgttgctaacacaaatactcatgtatgatgttggatac-aatgttccaatatcctggcacggttcaatgtgccc 24313039  T
Q  169 tgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    ||||| ||||| ||||||| |||||| ||||| || ||||||||    
T  24313040 tgtttgtgtggcttggttttcgcaagctttatgtttttaaggaa 24313083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 27111873 - 27111787
Alignment:
Q  91 tcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtg 178  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  27111873 tcattattgctaaaacaaatattcataaatgatgttggatacgat-gttccaacatcctggcacggttcaatgtgccctgtttatgtg 27111787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 27108307 - 27108198
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||||  ||||| | |||||||| |||||| ||||| ||||  ||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  27108307 tgttggatatttgtatattgacttcattatttctaaaataaatattcatacatgatgttggatacgat-gttccaacatcctggcacggttcagtgtgcc 27108209  T
Q  168 ctgtttatgtg 178  Q
     ||||||||||    
T  27108208 atgtttatgtg 27108198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 26859352 - 26859424
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaa 208  Q
    |||||||||||| |||||||||||| |||||| ||||||||| | ||||||||| |||  |||||||||||||    
T  26859352 tgttccaacatcttggcacggttcattgtgccatgtttatgttgcttggtttacacaatctttatcttattaa 26859424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 19197643 - 19197737
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtg 178  Q
    ||||||| ||||||||||||||| ||||| ||||   |||| ||||||| ||| ||||||||||  | |||||||||||||||||||| |||||||    
T  19197643 tattggcttcattattgctaaaaaaaatattcatacttgatgttggatatgat-gttccaacatgttagcacggttcagtgtgccctgcttatgtg 19197737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 20645604 - 20645666
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacat 146  Q
    ||||||| |||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  20645604 tattggcttcattatttctaaaacaaatattcatgcatgatgttggatacga-tgttccaacat 20645666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 25347991 - 25347897
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtg 178  Q
    ||||||||||| | ||||||||||||||| ||||| | ||| ||||||| |||| |||||||||   || ||| ||||||||||| | ||||||||    
T  25347991 tattggcctcacttttgctaaaacaaatattcatgcaagatgttggataagatt-ttccaacatatgggtacgattcagtgtgccttatttatgtg 25347897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 21249541 - 21249597
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||| |||||||| |||||    
T  21249541 tgtaagatgttggatacgat-gttccaacatcctggcacggtttagtgtgccttgttt 21249597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 22183613 - 22183756
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||||| ||||| |  |||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||    
T  22183613 tgttgggtatttgagtattggcttcattgtcactaaaacaaatactcatgtatgatgttggatacgat-gttccaatatcttggcacggttcagtgtgcc 22183711  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||  |||||||||||||  |||||||||||||||||    
T  22183712 ctgtttatgtgacttggtttacgcaatctttatcttattaaggaa 22183756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 24118398 - 24118265
Alignment:
Q  75 tatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttta 174  Q
    |||||| |||||||  ||||||||| ||||||||||| | ||||||||| ||||||| | | ||||||||||| ||||||||||||||||| ||||||||    
T  24118398 tatttgtgtattggtttcattattgataaaacaaatatttatgtatgatgttggatatgct-gttccaacatcttggcacggttcagtgtgtcctgttta 24118300  T
Q  175 tgtggtttggtttacgcaagttttatcttattaag 209  Q
    ||||  |||||||| |   | ||||||||||||||    
T  24118299 tgtgccttggtttatgtgcgctttatcttattaag 24118265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 17660759 - 17660868
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||||  ||||||| ||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||  |||||| ||||| ||| ||    
T  17660759 tgttggatatttgtatattggcttcattattgctaaaacaaatattcatgcatgatgttggatacga-tgttccaacatgttggcacagttcaatgttcc 17660857  T
Q  168 ctgtttatgtg 178  Q
    ||||| |||||    
T  17660858 ctgttaatgtg 17660868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 20127804 - 20127703
Alignment:
Q  67 gtgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgc 166  Q
    ||||||| ||||||  | ||||||||| | ||||||||||||||| |||| || ||| |||||||||| ||||||||||||  || ||||||||||||||    
T  20127804 gtgttggatatttgtttgttggcctcacttttgctaaaacaaatattcatttaagatgttggatacga-tgttccaacatctgggtacggttcagtgtgc 20127706  T
Q  167 cct 169  Q
    |||    
T  20127705 cct 20127703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 20740301 - 20740379
Alignment:
Q  91 tcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    ||||| ||||||||||||||| |||||| |||| |||||||| | |||||||||||| | |||| ||||||||| |||||    
T  20740301 tcatttttgctaaaacaaatattcatgtgtgatgttggatac-aatgttccaacatcctagcacagttcagtgtaccctg 20740379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 23624657 - 23624607
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  23624657 tgtaagatgttggatacgat-gttccaacatcctggcacggttcagtgtgcc 23624607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 30605034 - 30605084
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  30605034 tgtaagatgttggatacgat-gttccaacatcctggcacggttcagtgtgcc 30605084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 22082034 - 22082083
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgc 166  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  22082034 tgtaagatgttggatacgat-gttccaacatcctggcacggttcagtgtgc 22082083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 18477954 - 18477815
Alignment:
Q  69 gttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccc 168  Q
    ||||||||||||  ||||||| ||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||    
T  18477954 gttgggtatttggatattggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgccc 18477859  T
Q  169 tgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    ||||||||||| |||||||||||||  |||||||||||||||||    
T  18477858 tgtttatgtggcttggtttacgcaatctttatcttattaaggaa 18477815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 8225945 - 8225808
Alignment:
Q  67 gtgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgc 166  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||    
T  8225945 gtgttgggtatttgggtattggcttcatttttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgc 8225850  T
Q  167 cctgtttatgtggtttggtttacgcaagttttatcttattaa 208  Q
    ||| ||||||||| |||||||||||||  |||||||||||||    
T  8225849 cctatttatgtggcttggtttacgcaatatttatcttattaa 8225808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 31650548 - 31650405
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||||||||  ||||||||||| |||||| ||||||||||||    
T  31650548 tgttgggtatttgagtattggcttcattgttgcaaaaacaaatactcttgtatgatgttggatacgac-gttccaacatcttggcaccgttcagtgtgcc 31650450  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||| ||||| ||||||| ||| ||||||||||| ||||||||    
T  31650449 ctgtttgtgtggcttggttttcgcgagttttatctttttaaggaa 31650405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 214390 - 214531
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |    
T  214390 tgttgggtatttgagtattgacttcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgttccaacatcttggcacggttcagtgtgtc 214488  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
     ||||  ||||| ||||||| ||| |  |||||||| ||||||||    
T  214489 ttgtt--tgtggcttggttttcgcgaactttatctttttaaggaa 214531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 17042055 - 17042153
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||    
T  17042055 tgttgggtatttgagtattggcttcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgttccgacatcctggcacggttcagtgtgcc 17042153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 25020260 - 25020126
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||  |||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||| ||||||||    
T  25020260 tgttgggtatttaggtattggcctcattgttgttaaaacaaatactcatgtatgatgttggatacga-tgttccaacatcttgccacggtttagtgtgcc 25020162  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatctt 203  Q
     ||||| ||||| ||||||||| | || ||||||||    
T  25020161 ttgtttgtgtggcttggtttacacgagctttatctt 25020126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 15674133 - 15674276
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||| |||||||||| ||| |||||||| |||||| ||||||||||||    
T  15674133 tgttgggtatttgagtattgacttcattgttgctaaaacaaatactcatgtaagatgttggatacga-tgtcccaacatcttggcacagttcagtgtgcc 15674231  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    || ||| ||||| ||||||| ||| |  |||||||| | ||||||    
T  15674232 ctatttgtgtggcttggttttcgcgaactttatcttttcaaggaa 15674276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 11657160 - 11657020
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||| ||||| || ||||| ||||||||| |||||||||||||||   ||||||||||| ||||||||||| || |||||||||| ||| |    
T  11657160 tgttgggtatttgggtattagcttcattgttgctaaaataaatactcatgtatg---ttggatacgat-gttccaacatcttgacacggttcagcgtgtc 11657065  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
     || |||||||| |||||||||||||  |||||||||||||||||    
T  11657064 atggttatgtggcttggtttacgcaatctttatcttattaaggaa 11657020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 7495243 - 7495343
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| ||| | ||||||||||||||| |||||| |||| ||||||||| ||||| ||||||| | |||| ||||||||||||    
T  7495243 tgttggatatttgtgtgttggcttcacttttgctaaaacaaatattcatgtgtgatgttggatacg-ttgttacaacatcctagcacagttcagtgtgcc 7495341  T
Q  168 ct 169  Q
    ||    
T  7495342 ct 7495343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 13920360 - 13920266
Alignment:
Q  75 tatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    |||||| || ||||| ||| | ||||||||||||||| |||||| |||| |||||||||| ||||| |||||| | |||| |||||||||||||||    
T  13920360 tatttgtgtgttggcttcacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttctaacatcctagcacagttcagtgtgccctg 13920266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 6578798 - 6578848
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgt 118  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  6578798 tgttggctatttgagtattggcttcattgttgctaaaacaaatactcatgt 6578848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 3444349 - 3444457
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||||  |||| || ||||||||||||||| ||||| ||||| | ||| |||||||||| |||||| ||||  ||| ||||||||||||||     
T  3444349 tgttggatatttgtatattagcgtcattattgctaaaataaatattcatgcaagatgttggatacga-tgttcctacat-gtggtacggttcagtgtgct 3444446  T
Q  168 ctgtttatgtg 178  Q
    ||| |||||||    
T  3444447 ctgattatgtg 3444457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 7478480 - 7478581
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| | | | ||||||||||||||| |||||| |||| |||||||||| |||||||||||| | |||| ||||  ||||||    
T  7478480 tgttggatatttgtgtgttggctttacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttccaacatcctagcacagttctatgtgcc 7478578  T
Q  168 ctg 170  Q
    |||    
T  7478579 ctg 7478581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 13914613 - 13914541
Alignment:
Q  97 ttgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||| | |||| |||||||||||||||    
T  13914613 ttgctaaaataaatattcatgtgtgatgttggatacga-tgttccatcatcctagcacagttcagtgtgccctg 13914541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 3551841 - 3551878
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  3551841 tgttccaacatcgtggcacggttcagtgtgccttgttt 3551878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 10683108 - 10682975
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  10683108 tgttgggtatttcggtattggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgcc 10683013  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttat 205  Q
    |||||||||||| ||| |||||||||  ||||||||||    
T  10683012 ctgtttatgtggcttgatttacgcaatctttatcttat 10682975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 10896748 - 10896615
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||  |||||||| ||||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  10896748 tgttgggtatttcggtattggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgcc 10896653  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttat 205  Q
    |||||||||||| ||| |||||||||  ||||||||||    
T  10896652 ctgtttatgtggcttgatttacgcaatctttatcttat 10896615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 10723148 - 10723008
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||| ||||||||| ||||| |||||| |||||||| |||||||||   ||||||||||| ||||||||||| |||||||||||||||| ||    
T  10723148 tgttggatatttcagtattggcttcattgttgctagaacaaatagtcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgttcc 10723053  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  10723052 ctgtttatgtggcttggtttacgcaatctttatcttattaaggaa 10723008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 10936917 - 10936777
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||| ||||||||| ||||| |||||| |||||||| |||||||||   ||||||||||| ||||||||||| |||||||||||||||| ||    
T  10936917 tgttggatatttcagtattggcttcattgttgctagaacaaatagtcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgttcc 10936822  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| |||||||||||||  |||||||||||||||||    
T  10936821 ctgtttatgtggcttggtttacgcaatctttatcttattaaggaa 10936777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 49975111 - 49974969
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||||||| ||||||| || ||||||||| ||||| ||||  || ||||||||||| ||||||||||| ||||||| |||||||||||    
T  49975111 tgttgggtatttgagtattgacctcattgtttctaaaacaa-tactcttgtacaatgttggatacgat-gttccaacatcctggcacgattcagtgtgcc 49975014  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| ||||||||| | || |||||||| ||||||||    
T  49975013 ctgtttatgtggcttggtttacacgagctttatctttttaaggaa 49974969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 10718335 - 10718203
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||| ||||||||| ||||| || ||||| ||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  10718335 tgttgggtatttcagtattggcttcattgtttctaaa-caaatactcatgtatg---ttggatacgat-gttccaacatcctggcacggttcagtgtgcc 10718241  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttat 205  Q
    |||||||||||| ||| |||| ||||  ||||||||||    
T  10718240 ctgtttatgtggcttgatttatgcaatctttatcttat 10718203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 10932104 - 10931972
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||| ||||||||| ||||| || ||||| ||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  10932104 tgttgggtatttcagtattggcttcattgtttctaaa-caaatactcatgtatg---ttggatacgat-gttccaacatcctggcacggttcagtgtgcc 10932010  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttat 205  Q
    |||||||||||| ||| |||| ||||  ||||||||||    
T  10932009 ctgtttatgtggcttgatttatgcaatctttatcttat 10931972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 16616809 - 16616667
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||| ||||||||||| |||||||| |||||||  |||||||||||||||||| |||||| |||| ||||||| ||| |||||| ||||||||||||    
T  16616809 tgttgggcatttgagtattagcctcattgttgctaag-caaatactcatgtatgatgttggattcgat-gttccaatatcttggcacagttcagtgtgcc 16616712  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||| ||||| ||||||| | |  | |||||||||||||||||    
T  16616711 ctgtttgtgtggcttggttttcacgcgctttatcttattaaggaa 16616667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 21479261 - 21479139
Alignment:
Q  70 ttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccct 169  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||| || ||||||| || |||||||||||| ||||||  |||| |||| |||    
T  21479261 ttgggtatttgagtattggcttcattgttgttaaaacaaatactcatgtataatgttggatagga-tgttccaacatcttggcacaattcaatgtgtcct 21479163  T
Q  170 gtttatgtggtttggtttacgcaa 193  Q
    | |||||||| |||||||||||||    
T  21479162 gcttatgtggcttggtttacgcaa 21479139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 33746784 - 33746693
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttca 160  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||| |||| |||||||    
T  33746784 tgttgggtatttgagtattggcttcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgttctaacatcctggcgcggttca 33746693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 10197541 - 10197649
Alignment:
Q  68 tgttgggtatttgagtattggc--ctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtg 165  Q
    |||||| |||||| |||||| |  |||||||||||||||||||||| |||| |||||| ||||||| ||| ||||||||||| |||||||||||||||||    
T  10197541 tgttggatatttgtgtattgacttctcattattgctaaaacaaatattcatttatgatgttggatatgat-gttccaacatcttggcacggttcagtgtg 10197639  T
Q  166 ccctgtttat 175  Q
    || |||||||    
T  10197640 ccatgtttat 10197649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 33744332 - 33744242
Alignment:
Q  71 tgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagt 162  Q
    ||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||| || |||||||||||| | ||||||||||||    
T  33744332 tgggtgtttgagtattggcttaattgttgctaaaacaaatactcatgtatgatgttggataaga-tgttccaacatcctagcacggttcagt 33744242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 16654590 - 16654674
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggca 153  Q
    |||||| |||||| |||||||| ||||||||||||||||||||| ||||||| ||| ||||||| | ||||||||||||| |||||    
T  16654590 tgttggatatttgtgtattggcttcattattgctaaaacaaatattcatgtacgatgttggatatg-ttgttccaacatcttggca 16654674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 18006065 - 18006127
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacat 146  Q
    ||||||| |||||||| |||||||||||| ||||| ||||| |||||||||| |||||||||||    
T  18006065 tattggcttcattatttctaaaacaaatattcatgcatgatgttggatacga-tgttccaacat 18006127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 170
Target Start/End: Complemental strand, 31971778 - 31971677
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||| | ||| | ||||||||| ||||| |||||| |||| ||| ||||||| ||||||||||| | |||| ||||||||||||    
T  31971778 tgttggatatttgtgtgttgacttcacttttgctaaaataaatattcatgtgtgatgttgtatacgat-gttccaacatcctagcacagttcagtgtgcc 31971680  T
Q  168 ctg 170  Q
    |||    
T  31971679 ctg 31971677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 9069851 - 9069804
Alignment:
Q  71 tgggtatttgagtattggcctcattattgctaaaacaaatactcatgt 118  Q
    ||||||||||||||||| | ||||| |||||||||||||||| |||||    
T  9069851 tgggtatttgagtattgacttcattgttgctaaaacaaatacccatgt 9069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 2680597 - 2680501
Alignment:
Q  70 ttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||||||  ||||| ||||||| ||||||||||||||| ||| ||| ||| |||||| | | |||| ||||||  ||| |||||||||||||||    
T  2680597 ttggatatttgtatattgacctcattgttgctaaaacaaatattcaagtaagatgttggat-caaatgtttcaacatgttggtacggttcagtgtgcc 2680501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 16654697 - 16654769
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaa 208  Q
    |||| ||||||| |||||  |||||||||||||||||| ||||| ||||||| | | || |||||||| ||||    
T  16654697 tgtttcaacatcctggcatagttcagtgtgccctgtttgtgtggcttggttttcacgagctttatctttttaa 16654769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 28622904 - 28623047
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||  ||||||  || |||| |||||| |||||||||||||||||||    
T  28622904 tgttaggtatttgagtattgacttcattgttgctaaaacaaatactcatgtatgatgctggatattat-gttctaacatcttggcacggttcagtgtgcc 28623002  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| |||||||| ||||  ||||| |||||||||||    
T  28623003 ctgtttatgtggcttggtttatgcaatctttattttattaaggaa 28623047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 28624675 - 28624532
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||||||  ||| ||||||| ||||||||||||||||| |    
T  28624675 tgttggatatttgagtaatgacttcattgttgctaaaacaaatactcatgtatgatgttggatacgac-gtttcaacatcttggcacggttcagtgtgtc 28624577  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||| | |||||||||||||  ||||| |||||||||||    
T  28624576 ctgtttatgttgcttggtttacgcaatctttattttattaaggaa 28624532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 34639504 - 34639622
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||  ||||||| | ||| |||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  34639504 tgttgggtatttggatattggctttattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttccaacatcttggcacggttcagtgtgcc 34639599  T
Q  168 ctgtttatgtggtttggtttacg 190  Q
     ||||||||||| ||||||||||    
T  34639600 ttgtttatgtggcttggtttacg 34639622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 21316890 - 21317021
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| || |||||||| ||||||| || |||||||||||| |||||  ||||||||||||    
T  21316890 tgttgggtatttg--tattggcttcattattgctaaaacaaatattcttgtatgatgttggatatga-tgttccaacatcctggcatagttcagtgtgcc 21316986  T
Q  168 ctgtttatgtggtttggtttacgcaagttttatct 202  Q
    |||||| ||||| ||| ||| || ||| |||||||    
T  21316987 ctgtttgtgtggattgtttttcggaagctttatct 21317021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 212
Target Start/End: Complemental strand, 20559443 - 20559317
Alignment:
Q  82 gtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtggtt 181  Q
    |||| ||| ||||| |||||||||||||||||||||||||   ||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||| |    
T  20559443 gtataggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttctagtatcttggcacggttcagtgtgccctgtttatgtggct 20559348  T
Q  182 tggtttacgcaagttttatcttattaaggaa 212  Q
    || ||| |||||   ||||||||||||||||    
T  20559347 tgatttgcgcaatccttatcttattaaggaa 20559317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 24542518 - 24542420
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||  |||||||||| ||| ||||    
T  24542518 tgttggatatttgagtattgacttcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgttccaacattctggcacggtttagtatgcc 24542420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 18152069 - 18152163
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtg 178  Q
    ||||||| || ||||| |||||| ||||| ||||| ||||| ||||||||||| |||| |||||  ||||||||||||||||||||||||||||||    
T  18152069 tattggcttccttatttctaaaataaatattcatgcatgatgttggatacgat-gttctaacatgttggcacggttcagtgtgccctgtttatgtg 18152163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 20764257 - 20764319
Alignment:
Q  68 tgttgggtatttga-gtattggcctcattattgctaaaacaaatactcatgtatgatattgga 129  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||| |||||    
T  20764257 tgttgggtatttgatgtattggcttcattattgctaaaacaaatactcttgtttgatgttgga 20764319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 15930191 - 15930247
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  15930191 tgtaagatattggatacgat-gttccaacatcctggcacggttcagtgtgccttgttt 15930247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 16308665 - 16308763
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttcc-aacatcatggcacggttcagtgtgc 166  Q
    |||||| |||||| || ||||| ||| | ||||||||||||||| |||||| |||| |||||||||| |||||| |||||| | |||| |||||||||||    
T  16308665 tgttggatatttgtgtgttggcttcacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttccaaacatcctagcacagttcagtgtgc 16308763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 12385201 - 12385251
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  12385201 tgtaagatgttggatacgat-gttccaacatcctggcacggttcagtgtgcc 12385251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 19077959 - 19077909
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  19077959 tgtaagatgttggatacgat-gttccaacatcttggcacggttcagtgtgcc 19077909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 13196131 - 13196090
Alignment:
Q  125 ttggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  13196131 ttggatacgat-gttccaacatcctggcacggttcagtgtgcc 13196090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 19598497 - 19598441
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||| ||||||||||| ||||||||||| || |||||||||||||||| |||||    
T  19598497 tgtaagatgttggatacgat-gttccaacatcctgacacggttcagtgtgccttgttt 19598441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 23882041 - 23882097
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||| ||||||||||| ||||||||||| || |||||||||||||||| |||||    
T  23882041 tgtaagatgttggatacgat-gttccaacatcctgacacggttcagtgtgccttgttt 23882097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 25806215 - 25806176
Alignment:
Q  125 ttggatacgattgttccaacatcatggcacggttcagtgtg 165  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  25806215 ttggatacgat-gttccaacatcctggcacggttcagtgtg 25806176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 8282786 - 8282639
Alignment:
Q  66 agtgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtg 165  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||| |||||||| |    
T  8282786 agtgttaggtatttgagtattggcctcattgttgctaaaacaaatactcatgtatgatgttggatacga-tgttccaacatcctgacacagttcagtgag 8282688  T
Q  166 ccctgtttatgtggtttggtttacgcaagttttatcttattaaggaatc 214  Q
    || ||||||||||  ||| ||||| |  | |||||||||| ||||||||    
T  8282687 ccttgtttatgtgccttgttttacccgcgctttatcttatcaaggaatc 8282639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 190
Target Start/End: Original strand, 22347921 - 22348039
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||   ||||||||||| |||| |||||| |||||||||||||||||||    
T  22347921 tgttgggtatttgggtattggcttcattgttgctaaaacaaatactcatgtatg---ttggatacgat-gttctaacatcttggcacggttcagtgtgcc 22348016  T
Q  168 ctgtttatgtggtttggtttacg 190  Q
    |||||||||||| ||||||||||    
T  22348017 ctgtttatgtggcttggtttacg 22348039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 12753924 - 12753826
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  12753924 tgttgggtatttgagtgttggcttcattgttgctaaaacaaatactcatatatgatgttggatacga-tgttccaacatcctggcacggttcagtgtgcc 12753826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 18379388 - 18379497
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||| || ||||||||||||||| ||||| ||||| ||||| | ||| |||||||||| |||| ||||||   || |||||||||||||||    
T  18379388 tgttgggtatttgtgtgttggcctcattattgttaaaaaaaatattcatgcaagatgttggatacga-tgtttcaacatgtgggtacggttcagtgtgcc 18379486  T
Q  168 ctgtttatgtg 178  Q
    ||| |||||||    
T  18379487 ctgattatgtg 18379497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 51471454 - 51471529
Alignment:
Q  137 gttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||| ||| | |  | |||||||||||||||||    
T  51471454 gttccaacatcctggcacggttcagtgtgccctgtttgtgtggcttgattttcacgcgctttatcttattaaggaa 51471529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 18389410 - 18389459
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatg 117  Q
    |||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  18389410 tgttggatatttgtgtattggcctcattattgctaaaacaaatattcatg 18389459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 17355098 - 17355149
Alignment:
Q  68 tgttgggtatttga-gtattggcctcattattgctaaaacaaatactcatgt 118  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||| ||||||    
T  17355098 tgttgagtatttgaagtattggcctcatttttgctaaaacaaatattcatgt 17355149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 10339502 - 10339558
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||| ||||||||||| ||||||||||| || |||||||||||||||| |||||    
T  10339502 tgtaagatgttggatacgat-gttccaacatcttgacacggttcagtgtgccttgttt 10339558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 15914806 - 15914883
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaaggaat 213  Q
    |||| ||||||| || |||||||||||||||| ||||||||||  | | | ||| || | ||||||||||||||||||    
T  15914806 tgttgcaacatcttgacacggttcagtgtgccttgtttatgtgtctagttgtacacacgctttatcttattaaggaat 15914883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 51471346 - 51471430
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggca 153  Q
    |||||| |||||| |||||| | ||||||||||||||||||||  |||||||  || ||||||| | ||||| ||||||| |||||    
T  51471346 tgttggatatttgtgtattgacttcattattgctaaaacaaatgttcatgtaccatgttggatatg-ttgtttcaacatcttggca 51471430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 41478 - 41333
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||||||||||| || || || |||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||| | |||||||| |    
T  41478 tgttgggtatttgagtatttgcttctttgttgctaaaacaaatgctcatgtataatattggatacga-tgttccaacatcttggcacagctcagtgtgtc 41380  T
Q  168 ctgtttatgtggtttggtttacgcaa--gttttatcttattaaggaa 212  Q
     ||||||||||| |||||||||||||   ||||||||||||||||||    
T  41379 atgtttatgtggcttggtttacgcaatctttttatcttattaaggaa 41333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 68 - 212
Target Start/End: Complemental strand, 36421 - 36275
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatact---catgtatgatattggatacgattgttccaacatcatggcacggttcagtgt 164  Q
    |||||||||||||||||||| | ||||| ||||||||| ||||| |   |||||||||| || || ||||| ||||||||||| |||||||||| || ||    
T  36421 tgttgggtatttgagtattgacttcattgttgctaaaaaaaataatattcatgtatgatgtttgacacgat-gttccaacatcttggcacggttgagcgt 36323  T
Q  165 gccctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||    
T  36322 gccctgtttatgtggtttggtttacgcaatctttatcttattaaggaa 36275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 52237 - 52360
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| ||| | |||| |||||||||| ||||||||||| ||||||||||| ||||||||||| ||| |||||||||||| ||    
T  52237 tgttggatatttgtgtgttggcttcacttttgcaaaaacaaatattcatgtatgatgttggatacgat-gttccaacatcttggtacggttcagtgtccc 52335  T
Q  168 ctgtttatgtggtttggtttacgca 192  Q
    |||||||||||| ||| ||||||||    
T  52336 ctgtttatgtggcttgatttacgca 52360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 45295 - 45382
Alignment:
Q  100 ctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggttta 188  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||    
T  45295 ctaaaacaaatattcatgtatgatgttggatacgat-gttccaacatcttggcatggttcagtgtgccctgtttatgtggcttgattta 45382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 5829 - 5689
Alignment:
Q  70 ttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccct 169  Q
    |||| ||||||| |||| || ||| | || |||||||||||| |||| |||||| ||||||| ||| ||||||||||| ||||| |||||||||||||||    
T  5829 ttggatatttgaatattagcttcacttttcctaaaacaaatattcatatatgatgttggatatgat-gttccaacatcctggcatggttcagtgtgccct 5731  T
Q  170 gtttatgtggtttggtttacgcaagttttatcttattaagga 211  Q
    |||||||||  |||| || || |   ||||||||||||||||    
T  5730 gtttatgtgtgttggctttcgtacactttatcttattaagga 5689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 12054 - 11944
Alignment:
Q  100 ctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagtttta 199  Q
    |||||||||||| |||| |||||| ||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||  |||| || || |   ||||    
T  12054 ctaaaacaaatattcatatatgatgttggatatgat-gttccaacatcctggcatggttcagtgtgccctgtttatgtgtgttggctttcgaacacttta 11956  T
Q  200 tcttattaagga 211  Q
    ||||||||||||    
T  11955 tcttattaagga 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 170
Target Start/End: Original strand, 50205 - 50306
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||| |||||| || ||||| ||| | ||||||||||||||| |||||| |||| |||||||||| |||||||||||| | |||| ||||||||||||    
T  50205 tgttggatatttgtgtgttggcttcacttttgctaaaacaaatattcatgtgtgatgttggatacga-tgttccaacatcctagcacagttcagtgtgcc 50303  T
Q  168 ctg 170  Q
    |||    
T  50304 ctg 50306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 23863622 - 23863732
Alignment:
Q  101 taaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttat 200  Q
    ||||||||||||||||||| ||| ||||||| ||| ||||||| ||  |||||| |||||||||||||||||| ||||| ||||||| ||| |  |||||    
T  23863622 taaaacaaatactcatgtaggatgttggatatgat-gttccaaaatgttggcacagttcagtgtgccctgtttgtgtggcttggttttcgcgaactttat 23863720  T
Q  201 cttattaaggaa 212  Q
    ||| ||| ||||    
T  23863721 ctttttacggaa 23863732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 23867572 - 23867623
Alignment:
Q  69 gttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtat 120  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  23867572 gttgggtatttgagtattggcttcattgttgctaaaacaaatactcatgtat 23867623  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 24849465 - 24849524
Alignment:
Q  73 ggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatac 132  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||| ||||||||    
T  24849465 ggtatttgagtattgacttcattgttgctaaaacaaatactcatgtatgatgttggatac 24849524  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 9997406 - 9997356
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgt 118  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  9997406 tgttgggtatttgagtattggcttcattgttgctaaaacaaatacccatgt 9997356  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 12813881 - 12813950
Alignment:
Q  83 tattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggca 153  Q
    ||||||| ||||||||||||||||||||||||  ||||||| ||||||| | ||||||||||||| |||||    
T  12813881 tattggcttcattattgctaaaacaaatactctagtatgatgttggatatg-ttgttccaacatcctggca 12813950  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 12376205 - 12376289
Alignment:
Q  85 ttggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||||| || ||||||||||    || | ||||||||||||||||    
T  12376205 ttggcctcattattgctaaaacaaatattcatgcaagatgttggataaga-tgttccaacaggtgggtatggttcagtgtgccctg 12376289  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 18622477 - 18622421
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctgttt 173  Q
    |||| ||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  18622477 tgtaagatgttggatacgat-gttccaacatcttggcacggttcagtgtgccttgttt 18622421  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 12813973 - 12814049
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtgccctgtttatgtggtttggtttacgcaagttttatcttattaaggaa 212  Q
    |||||||||||| ||||||||||||||| |||||| || ||||| ||||||| | |    |||||||||||||||||    
T  12813973 tgttccaacatcttggcacggttcagtgggccctggttttgtggcttggttttcacgcactttatcttattaaggaa 12814049  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 23250545 - 23250483
Alignment:
Q  104 aacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||||||| ||| || |||||||||| ||||| ||||||||||| ||||| |||||||||||||    
T  23250545 aacaaatattcaagtgtgatattggacacgat-gttccaacatcctggcatggttcagtgtgcc 23250483  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 26537084 - 26537055
Alignment:
Q  136 tgttccaacatcatggcacggttcagtgtg 165  Q
    ||||||||||||||||||||||||||||||    
T  26537084 tgttccaacatcatggcacggttcagtgtg 26537055  T

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Target: scaffold0480 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 12015 - 11943
Alignment:
Q  97 ttgctaaaacaaatactcatgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgccctg 170  Q
    ||||||||||||||| ||| || |||| ||||| ||||| ||| ||||||| ||||||||||||||||||||||    
T  12015 ttgctaaaacaaataatcaagtgtgatgttggacacgat-gtttcaacatcctggcacggttcagtgtgccctg 11943  T

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Target: scaffold1001 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 872 - 822
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgt 118  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  872 tgttgggtatttgagtattgtcttcattgttgctaaaacaaatattcatgt 822  T

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Target: scaffold1001; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 778 - 728
Alignment:
Q  116 tgtatgatattggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  778 tgtaagatgttggatacgat-gttccaacatcttggcacggttcagtgtgcc 728  T

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Target: scaffold0505 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 9310 - 9373
Alignment:
Q  82 gtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacat 146  Q
    |||||||| |||||||||||||||||||||||| ||| |||| ||||| | | ||||||||||||    
T  9310 gtattggcttcattattgctaaaacaaatactcttgtttgatgttggaaatg-ttgttccaacat 9373  T

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Target: scaffold0423 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 14425 - 14348
Alignment:
Q  68 tgttgggtatttgagtattggcctcattattgctaaaacaaatactcatgtatgatattggatacgattgttccaacat 146  Q
    |||||| ||||||  | ||||||||||||||  ||||||||||| ||||| | ||| |||||||||| |||||||||||    
T  14425 tgttggatatttgtatgttggcctcattatttttaaaacaaatattcatgcaagatgttggatacga-tgttccaacat 14348  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 16312 - 16271
Alignment:
Q  125 ttggatacgattgttccaacatcatggcacggttcagtgtgcc 167  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  16312 ttggatacgat-gttccaacatcctggcacggttcagtgtgcc 16271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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