View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_high_3 (Length: 577)
Name: NF8211_high_3
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 29942615 - 29942060
Alignment:
| Q |
1 |
atgtgacatggttaatgctgaaaaactttatacttgtgatgtggtacgtgccatcaagaaaaggatcatgatgaaaagtgttagaggtcagtatttggct |
100 |
Q |
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| T |
29942615 |
atgtgacatggttaatgctgaaaaactttatacttgtgatgtggtacgtgccatcaagaaaaggatcatgatgaaaagtgttagaggtcagtatttggct |
29942516 |
T |
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| Q |
101 |
ttggttttgcttgaagcgttggtggagaattgtgacaagggtttctttgaggttgcaactgagagagttcttgatgaaatggttaagattgttgatgatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29942515 |
ttggttttgcttgaagcgttggtggagaattgtgacaagggtttctttgaggttgcaactgagagagttcttgatgaaatggttaagattgttgatgatc |
29942416 |
T |
|
| Q |
201 |
ctgatcagagttttgttcctagtaaggagaaggctttgatgatgattcaggtttggggagagtcaaatactgagcttagatatctacctgtttatgaaga |
300 |
Q |
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| T |
29942415 |
ctgatcagagttttgttgctagtaaggagaaggctttgatgatgattcaggtttggggagagtcaaatactgagcttagatatctacctgtttatgaaga |
29942316 |
T |
|
| Q |
301 |
aacttacaaggt----atgttcataacttttcatgctttttagaataaaaataagatatacgaattatcataaattgataatccctagttctcaactgta |
396 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29942315 |
aacttacaaggtatgtatgttcatagcttttcatgctttttagaataaaaataagatatacgaattatcataaattgataatccctagttctcaattgta |
29942216 |
T |
|
| Q |
397 |
gatcaaaataatcaaatagatgaatgtatcagttatgataatccctaattttacatattatgaccacaaattcaaatctaaataaatcatataatgaaac |
496 |
Q |
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| T |
29942215 |
gatcaaaaaaatcaaatagatgaatgtatcagttatgataatccctaattttacatattatgaccacaaattcaaatctaaataaatcatataatgaaac |
29942116 |
T |
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| Q |
497 |
gcacacaaagacacaaattattgatcatagattcataaagttcggccaattatgaatatatctt |
560 |
Q |
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| T |
29942115 |
gc--------acacaaattattgatcatagattcataaagttcggccaattatgaatatatctt |
29942060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 1376405 - 1376250
Alignment:
| Q |
47 |
cgtgccatcaagaaaaggatcatgatgaaaagtgttagaggtcagtatttggctttggttttgcttgaagcgttggtggagaattgtgacaagggtttct |
146 |
Q |
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||||| || |||||| |||||||||| |||| | ||| | |||||||||||||||||||||||||||| | | || |||||||||| || | || | |
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| T |
1376405 |
cgtgctattaagaaacggatcatgattaaaattcctagggttcagtatttggctttggttttgcttgaaactgttgttaagaattgtgaaaaagcgtttt |
1376306 |
T |
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| Q |
147 |
ttgaggttgcaactgagagagttcttgatgaaatggttaagattgttgatgatcct |
202 |
Q |
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||| ||||| | || |||||||||||||| ||||||| | || ||||||||||| |
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| T |
1376305 |
ctgaagttgctgcggaaagagttcttgatgagatggttagggttattgatgatcct |
1376250 |
T |
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