View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_high_7 (Length: 386)
Name: NF8211_high_7
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 9302308 - 9302652
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302308 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
9302407 |
T |
|
| Q |
118 |
caattataaaaattggtgctgcaaatttctgagatttgtgcagtagattgtctcaatatgaaggagctgcaggctaccacatctannnnnnnnatcaacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
9302408 |
caattataaaaattggtgctgcaaatttctgagattggtgcagtagattgtctcaatatgaaggagctgcaggctaccacatcta-tttttttatccacg |
9302506 |
T |
|
| Q |
218 |
ttggcttccaacttataggtcttaaattattgaaaagtgcaatataattgaagcgacatataatttattataaatcagaaaacaaagtgatgagaaaatt |
317 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302507 |
ttggctt----------ggtcttaaattattgaaaagtgcaatataattgaagcgacatataatttattataaatcagaaaacaaagtgatgagaaaatt |
9302596 |
T |
|
| Q |
318 |
agtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttttctgtgtaca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302597 |
agtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttttctgtgtaca |
9302652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 9332733 - 9332908
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |
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| T |
9332733 |
atgaatatagctggcatgtcttcctagtgttggcaatcagaaaacctcattagtcatcaattagcttgcctcctttgctgccacattaccctcatcattt |
9332832 |
T |
|
| Q |
118 |
caattataaaaattggtgctgcaaatt--tctgagatttgtgcagtagattgtctcaatatgaaggagctgcaggc |
191 |
Q |
| |
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|||||||||||||| ||| |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9332833 |
caattataaaaattagtggtgcatatttctctgagatttgtgcagtaggttgtctcaatatgaaggagctgcaggc |
9332908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 9352484 - 9352619
Alignment:
| Q |
56 |
agaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttctgagatttg |
155 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||| | |||||||||||| |
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| T |
9352484 |
agaaaacctcattagtcatcaattagcttgcctcctttgctgccacataactctcataatttcaattataaaaactggtgctgcatagttctgagatttg |
9352583 |
T |
|
| Q |
156 |
tgcagtagattgtctcaatatgaaggagctgcaggc |
191 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
9352584 |
tgcagtaggttgtctcaatatgaaggagctgcaggc |
9352619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 9305959 - 9306097
Alignment:
| Q |
56 |
agaaaacctcattagtcatcaactagtttgcctcctt-tgctgccacattaccctcatcgtttcaattataaaaattggtgctgcaaatttct--gagat |
152 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | ||||||||||| || || || ||||||||| |||||| ||||||||||||||| ||||| |
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| T |
9305959 |
agaaaacctcattagtcatcaattagcttgcctccctatgctgccacataactcttataatttcaattagaaaaatcagtgctgcaaatttctctgagat |
9306058 |
T |
|
| Q |
153 |
ttgtgcagtagattgtctcaatatgaaggagctgcaggc |
191 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
9306059 |
ctgtgcagtaggttgtctcaatatgaaggagctgcaggc |
9306097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 9373085 - 9372961
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtt--tgcctcctttgctgccacattaccctcatcgt |
115 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||| |||| ||| | || ||||||||||||||||||||| | |
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|
| T |
9373085 |
atgaatatagctggcatgtcttctttgtgttggcaatcagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcat |
9372986 |
T |
|
| Q |
116 |
ttcaattataaaaattggtgctgca |
140 |
Q |
| |
|
||||||||| | |||||||||||| |
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|
| T |
9372985 |
ttcaattattattattggtgctgca |
9372961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 9309519 - 9309402
Alignment:
| Q |
22 |
atatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaa----ctagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| ||||| ||| |
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|
| T |
9309519 |
atataactggcatgtcttcctaatgttggcaatcagaaaacctcattagtcatcaattagctagtttgcctcctctgctgctacattagactcataattt |
9309420 |
T |
|
| Q |
118 |
caattataaaaattggtg |
135 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
9309419 |
caattataaaaattggtg |
9309402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 9348549 - 9348442
Alignment:
| Q |
28 |
ctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgtttcaattataaa |
127 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||| |||||||||||| ||||||||||||| |||||| |||||| ||||| ||||||||||||| |
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| T |
9348549 |
ctggcatgtcttcctaatgttggcaaacagaaaacctgattagtcatcaattagtttgcctcctctgctgctacattagactcataatttcaattataaa |
9348450 |
T |
|
| Q |
128 |
aattggtg |
135 |
Q |
| |
|
|||||||| |
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|
| T |
9348449 |
aattggtg |
9348442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 9367167 - 9367058
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||| ||| ||||| ||| |
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|
| T |
9367167 |
atgaatatagctggcatgtcctccgagtgttggcaattagaaaacctcattagtcaccaattagcttgcctcctttgctgccaca-tacattcatcattt |
9367069 |
T |
|
| Q |
118 |
caattataaaa |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
9367068 |
caattataaaa |
9367058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9298071 - 9298191
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| | ||||| |||||| |||||||||||||| ||||| || |
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|
| T |
9298071 |
atgaatatagctgccatgtctttatagtgttggcaatcagaaaacatcattagtcattagtaagttt-cctcctctgctgccacattacattcatcaatt |
9298169 |
T |
|
| Q |
118 |
caattataaaaattggtgctgc |
139 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
9298170 |
aaattatgaaaattggtgctgc |
9298191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9288943 - 9289063
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatcaactagtttgcctcctttgctgccacattaccctcatcgttt |
117 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |||||||||| ||||||| | ||||| |||||| |||||||||||||| |||||| || |
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|
| T |
9288943 |
atgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctcagtagtcattagtaagttt-cctcctctgctgccacattacactcatcaatt |
9289041 |
T |
|
| Q |
118 |
caattataaaaattggtgctgc |
139 |
Q |
| |
|
|||||| ||||||||| |||| |
|
|
| T |
9289042 |
aaattattaaaattggttctgc |
9289063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 9293464 - 9293522
Alignment:
| Q |
18 |
atgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcatca |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9293464 |
atgaatatagctggcatgtcttcatagtgttggcaatcataaaacctcattagtcatca |
9293522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 9352713 - 9352763
Alignment:
| Q |
313 |
aaattagtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttt |
363 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
9352713 |
aaattagtaggcatctagattaggaacgtgtgtgtgcacgagtggagtttt |
9352763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 9355925 - 9355873
Alignment:
| Q |
22 |
atatagctggcatgtctttgtagtgttggcaatcagaaaacctcattagtcat |
74 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9355925 |
atataactggcatgtcttcctaatgttggcaatcagaaaacctcattagtcat |
9355873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 9306190 - 9306246
Alignment:
| Q |
313 |
aaattagtaggcatttaaattaggaacgtgtgtgtgcacgagtggaatttttctgtg |
369 |
Q |
| |
|
|||||||||||| | || ||| |||||||||||||||||||||| | |||| ||||| |
|
|
| T |
9306190 |
aaattagtaggcctctagatttggaacgtgtgtgtgcacgagtgaagttttgctgtg |
9306246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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