View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_1 (Length: 1097)
Name: NF8211_low_1
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 987; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 987; E-Value: 0
Query Start/End: Original strand, 20 - 1079
Target Start/End: Complemental strand, 52359214 - 52358159
Alignment:
| Q |
20 |
tgcatcacaatcaatttataatttacttacatcagaatccacacatatactaaattttgaaggagtttatatttgagtttctactcatcaaaggtaccat |
119 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52359214 |
tgcatcacaatcaattta--atttacttacatcagaatccacacatatactaaattttgaaggagtttatatttgagtttctactcatcaaaggtaccat |
52359117 |
T |
|
| Q |
120 |
aggttcatcaaaatttactggtagatagactaagagtgcaaaatacattgcatagtatagttgtaaggattaatatgatataccaagaacctttttgcta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52359116 |
aggttcatcaaaatttactggtagatagactaag--tgcaaaatacattgcatagtatagttgtaaggattaatatgatataccaagaacctttttgcta |
52359019 |
T |
|
| Q |
220 |
cgtaatatgtctccgtaaatgtgatccccaacatacagaacctacacataaagcatccagatttttacaggaagcttcagtaataacaataatcctcaag |
319 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52359018 |
cgtaatatgtctccataaatgtgatccccaacatacagaacctacacataaagcatccagatttttacaggaagcttcagtaataacaataatcctcaag |
52358919 |
T |
|
| Q |
320 |
tactcttaattaacaactacctgtgaacttgattcaatggaaagcagtttatgcagatgagctacattgcctccctacaacagatgttcgcaatcactag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52358918 |
tactcttaattaacaactacctgtgaacttgattcaatggaaagcagtttatgcagatgagctacattgcctccctacaacagatgttcgcaatcactag |
52358819 |
T |
|
| Q |
420 |
gtaaatacagagatcttgtcaaaaatgaaaggtaaatactgagatcctaagctatcaaacatttacggatacagactaaggattaagataactttaactt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52358818 |
gtaaatacagagatcttgtcaaaaatgaaaggtaaatactgagatcctaagctatcaaacatttacggatacagactaaggattaagataactttaactt |
52358719 |
T |
|
| Q |
520 |
caaatagatttgtgtcctaaacaaaattattttcattttacagaggataatgattgtacctggaaaacttggcaagcgtgattcgttgcttctgtgaata |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52358718 |
caaatagatttgtgtcctaaacaaaattattttcattttacagaggataatgattgtacctggaaaacttggcaagcgtgattcgttgcttctgtgaata |
52358619 |
T |
|
| Q |
620 |
tccttgctgagatgttccccacctttcaatatnnnnnnnnntatggcccaaatctttatacaagatataaaggaatgaatgaaatgatgtgctattgtgc |
719 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52358618 |
tccttgctgagatgttccccacctttcaatataaaaaaaaatatggcccaaatctttatacaagatataaaggaatgaatgaaatgatgtgctattgtgc |
52358519 |
T |
|
| Q |
720 |
taacctgaggcataggagagccattatctgtattgagtagcattccagtctcaggcacaacctcaaataggttggcacaattttcctcatgaaaaaatcc |
819 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52358518 |
taacctgaggcataggagagccattatctgtattgagtagcattccagtctcaggcacaacctcaaataggttggcacgattttcctcatgaaaaaatcc |
52358419 |
T |
|
| Q |
820 |
tggctttgcactgtaggatagtggatgtgaacaggttagcagccaaatccacaactaaaacattatagattgctatcagaaacccaacagttaacgctca |
919 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52358418 |
tggcttcgcactgtaggatagtggatgtgaacaggttagcagccaaatccacaactaaaacattatagcatgctatcagaaacccaacagttaacgctca |
52358319 |
T |
|
| Q |
920 |
agataaaaaacactgcttggatgtttcttactccctttaatataagactccttcaactaattcacggatattaagaaaagtggttgatttagttaatatt |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52358318 |
agataaaaaacactgcttggatgtttcttactccctttaatataagactccttcaactaattcacggatattaagaaaagtggttgatttagttaatatt |
52358219 |
T |
|
| Q |
1020 |
gttaattgaaataaatttgtcaataatgtgtaatgattgtcaccaattaatttttagcct |
1079 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
52358218 |
gttaattgaaataaatttgtcaataatgtgtactgattgtcaccaattaatttttagcct |
52358159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 704 - 832
Target Start/End: Complemental strand, 6986854 - 6986726
Alignment:
| Q |
704 |
tgatgtgctattgtgctaacctgaggcataggagagccattatctgtattgagtagcattccagtctcaggcacaacctcaaataggttggcacaatttt |
803 |
Q |
| |
|
|||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| | ||||| |||||||| |||||||||||||||| ||| |||| |
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| T |
6986854 |
tgatatgctattgtgctgacctgaggcattggagagccattatctgtattaagtaactttccactctcaggctcaacctcaaataggttagcatgatttc |
6986755 |
T |
|
| Q |
804 |
cctcatgaaaaaatcctggctttgcactg |
832 |
Q |
| |
|
||||| |||| || | ||||||||||||| |
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| T |
6986754 |
cctcaagaaagaagcttggctttgcactg |
6986726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 6987462 - 6987380
Alignment:
| Q |
183 |
taaggattaatatgatataccaagaacctttttgctacgtaatatgtctccgtaaatgtgatccccaacatacagaacctaca |
265 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| |||| ||| ||||| ||||| ||||| ||||||||||||||||||| |
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| T |
6987462 |
taaggattcatataatataccaagaacctttttgctgcgtagtatatctccataaatatgatctccaacatacagaacctaca |
6987380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 704 - 832
Target Start/End: Original strand, 35483213 - 35483338
Alignment:
| Q |
704 |
tgatgtgctattgtgctaacctgaggcataggagagccattatctgtattgagtagcattccagtctcaggcacaacctcaaataggttggcacaatttt |
803 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||||| | |||| |||| |||||||| |||||||||| ||||| ||| ||| | |
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| T |
35483213 |
tgatgtgctattgtg---acctgaggcagaggagagccattatttgtattacggagcactccactctcaggctcaacctcaaacaggttagcatgattat |
35483309 |
T |
|
| Q |
804 |
cctcatgaaaaaatcctggctttgcactg |
832 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
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|
| T |
35483310 |
cctcctgaaaaaaatttggctttgcactg |
35483338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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