View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_10 (Length: 381)
Name: NF8211_low_10
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 49813963 - 49814337
Alignment:
| Q |
1 |
ccaggtaagagcttctcgctgcatagaaagcattggtcaagaaaagttgaaaccttaaaaggagagtggtaggaaagtggagaggaagcattgttgttga |
100 |
Q |
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| T |
49813963 |
ccaggtaagagcttcttgctgcatagaaagcattggtcaagaaaagttgaaaccttaaaaggagaatggtaggaaagtggataggaagcattgttgttga |
49814062 |
T |
|
| Q |
101 |
ttgtgctgctaagcatcatggtagttttgttaataacttgataagtgttattgttgttgttgatgttgatattacactttttcttatgtggttgttgttc |
200 |
Q |
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| T |
49814063 |
ttgtgctgctaagcatcatggtagttttgttaataacttgataagtgttattgttgttgttgatgttgatattacactttttcttatgtggttgttgttc |
49814162 |
T |
|
| Q |
201 |
ttcaagcacaacaccaagaccaaccatatttcattctctgatttttctttctgttgtggtgtcactattaaattgttcactatgttttaggttggtagtg |
300 |
Q |
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| T |
49814163 |
ttcaagcacaacaccaagaccaaccatatttcattctctgatttttctttctgttgtggtgtcactattaaattgttcactatgttttaggttggtagtg |
49814262 |
T |
|
| Q |
301 |
gaatgaataatgtaataacataaataggaaaaaagaaaagaaggagaagatgaaatagtaagtagagagagtatt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49814263 |
gaatgaataatgtaataacataaataggaaaaaagaaaagaaggagaagatgaaatagtacgtagagagagtatt |
49814337 |
T |
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