View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8211_low_11 (Length: 343)

Name: NF8211_low_11
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8211_low_11
NF8211_low_11
[»] chr1 (9 HSPs)
chr1 (1-328)||(2288843-2289168)
chr1 (62-184)||(670986-671108)
chr1 (78-167)||(28239054-28239146)
chr1 (80-145)||(6326786-6326851)
chr1 (82-157)||(47569148-47569226)
chr1 (71-150)||(14508839-14508918)
chr1 (87-164)||(28231490-28231570)
chr1 (96-145)||(677216-677265)
chr1 (96-141)||(21159183-21159228)
[»] chr5 (1 HSPs)
chr5 (96-158)||(1717892-1717954)
[»] chr3 (1 HSPs)
chr3 (79-156)||(47924934-47925011)
[»] chr6 (2 HSPs)
chr6 (96-150)||(24934101-24934155)
chr6 (96-150)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 2289168 - 2288843
Alignment:
Q  1 acaattgctgagacaggtactattactaaagattgacaccagacaagaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaag 100  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289168 acaattgctgggacaggtactattactaaagattcacaccagacaagaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaag 2289069  T
Q  101 gatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289068 gatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttgt 2288969  T
Q  201 gtgttgctgctcaatttaaacaagctatcagcttctttagacaactaaactacaccgatccaaaaattggtgttcagttttttgagatctgtcggtatta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2288968 gtgttgctgctcaatttaaacaagctatcagcttctttagacaactaaactacaccgatccaaaaattggtgttcagttttttgagatctgtcggtatt- 2288870  T
Q  301 aaattcaattacattcaaccaaatattt 328  Q
     |||||||||||||||||||||||||||    
T  2288869 -aattcaattacattcaaccaaatattt 2288843  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 671108 - 670986
Alignment:
Q  62 gttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgc 161  Q
    ||||||||| ||||  |||||||| |||||||  |||| ||||||||||||| ||||| ||||| |||||||| | |||||||||||||||| |||  |     
T  671108 gttttgttggataagaaaatcatattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgattgttaacaagatcgagt 671009  T
Q  162 ctgattatgacacacatcatcat 184  Q
    |||||| || |||||||||||||    
T  671008 ctgattgtgtcacacatcatcat 670986  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 28239054 - 28239146
Alignment:
Q  78 aaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctgatt 167  Q
    ||||||||  ||||||| |||| ||||||||||||| ||||||||||||||| |||||| |||||||   ||||||||||||||  |||||||    
T  28239054 aaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccctgatt 28239146  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 6326851 - 6326786
Alignment:
Q  80 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 145  Q
    ||||||||||| ||| |||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  6326851 atcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt 6326786  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 47569148 - 47569226
Alignment:
Q  82 catactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt---gttaacaacatc 157  Q
    |||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||   ||||||||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatc 47569226  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 14508918 - 14508839
Alignment:
Q  71 tataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 150  Q
    |||||| | |||||| |||| ||  |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  14508918 tataacaatatcatattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaa 14508839  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 28231490 - 28231570
Alignment:
Q  87 tcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctg 164  Q
    |||| ||| |||| ||||||||||| | |||||||||||| ||||||||| |||||||   |||||||||||||| |||||    
T  28231490 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctg 28231570  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 677216 - 677265
Alignment:
Q  96 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 145  Q
    |||| ||||||||||||   ||||||||||||||||||||| ||||||||    
T  677216 gcaaagatagacttgtacatcaagcctatgatttatattctgaaatgatt 677265  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 21159228 - 21159183
Alignment:
Q  96 gcaaggatagacttgtaatccaagcctatgatttatattctaaaat 141  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  21159228 gcaaagatagacttataaaccaagcctatgatttatattctgaaat 21159183  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 1717892 - 1717954
Alignment:
Q  96 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatca 158  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||    
T  1717892 gcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatca 1717954  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 47925011 - 47924934
Alignment:
Q  79 aatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacat 156  Q
    |||||||||||  ||| |||| |||||||| ||||  ||||||||||| || |||||| ||||||||||||| |||||    
T  47925011 aatcatactcaccctctgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgattgttaagaacat 47924934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 24934101 - 24934155
Alignment:
Q  96 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 150  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24934101 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24934155  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 24941634 - 24941688
Alignment:
Q  96 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 150  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24941634 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24941688  T

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