View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_13 (Length: 341)
Name: NF8211_low_13
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 32346291 - 32346603
Alignment:
| Q |
19 |
agacataagtactaattagataacgtcaataatcatctttatccagctagtagaacacaacaagaagtaaaagacactatataatcaattctagtcagca |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32346291 |
agacctaagtactaattagataacgtcaataatcatctttatccagctagtagaacacaacaagaagtaaaagacactatataatcaattctagtcagca |
32346390 |
T |
|
| Q |
119 |
tacaaaattagttagaaaaagtaaatttagaagcattcatcttgtcaaagaatcagctctgtaaagcatagtgaatgaaagcattatccgtagctctaat |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
32346391 |
tacaaaattagttaggaaaagtaaatttagaagcattcatcttgtcaaagaatcagctctggaaagcatagtgaatgaaagcattatctgtagctctaat |
32346490 |
T |
|
| Q |
219 |
cttcggtactacnnnnnnngcatctaatatattggtaaacaagcatatgtccaagatatttattaaacatatgataaagtttatgacgaatcaagtgtct |
318 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32346491 |
cttcggtactacaaaaaaagcatctaacatattggtaaacaagcatatgtccaagatatttattaaacatatgatagagtttatgacgaatcaagtgtct |
32346590 |
T |
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| Q |
319 |
cacagtttcatct |
331 |
Q |
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||||||| ||||| |
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| T |
32346591 |
cacagttccatct |
32346603 |
T |
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