View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8211_low_14 (Length: 334)
Name: NF8211_low_14
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 1355222 - 1354919
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1355222 |
caattgctccatgagctaagatcttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgtcctttcctcgaatccttcaggtaattcaag |
1355123 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355122 |
tgtaccctctttcagattcttcaaagtccaaaagaaagacaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
1355023 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1355022 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcat |
1354923 |
T |
|
| Q |
319 |
ctct |
322 |
Q |
| |
|
|||| |
|
|
| T |
1354922 |
ctct |
1354919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 1362108 - 1361805
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362108 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
1362009 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1362008 |
tgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaac |
1361909 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361908 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
1361809 |
T |
|
| Q |
319 |
ctct |
322 |
Q |
| |
|
|||| |
|
|
| T |
1361808 |
ctct |
1361805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 20492893 - 20492590
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
|||||| ||||||||||||||| || ||||| ||||||||||| |||||||| ||||| |||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
20492893 |
caattgatccatgagctaagatctttagctgtggtgcccatgttttccaaacgattccatattcttttgttctttcttcaaatccttcgggtaattcaag |
20492794 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
|||||| ||||| || || ||||||| |||||||||||| |||| ||| |||||||||||| ||| |||||||||| ||||| ||| | ||||| ||| |
|
|
| T |
20492793 |
tgtaccttctttaaggtttttcaaagcccaaaagaaaggtaacctagattgctcaattccatgagctaactcagttagatcttgttgatttaactttaac |
20492694 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
318 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||||| | ||| ||||| || |||| || |
|
|
| T |
20492693 |
tcgctcccgaatccaatgtaaacaaccgaagatgattcttttgaatccaaccaagccttgattttcacccaatcagggtcgttttcttcttcctcattgt |
20492594 |
T |
|
| Q |
319 |
ctct |
322 |
Q |
| |
|
|||| |
|
|
| T |
20492593 |
ctct |
20492590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 29954758 - 29954455
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
29954758 |
caattgatccatgagctaagatcttaagttgaggtgcccatgttttccaaacgattccacattcttttgttctttcctcaaatcctttaggtaattcaag |
29954659 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||| || || ||||||||| |
|
|
| T |
29954658 |
tgtaccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattccatgcgctaactcagttagatcttgttggcttaacttcaac |
29954559 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
318 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| ||| | ||||||||||| |||| |
|
|
| T |
29954558 |
tcgctcccaaatccaatgtaaacaacagaagatgattcttttgaatccaaccatgccttgattttcacccaactagggttgctttcttcctcttcgtcgt |
29954459 |
T |
|
| Q |
319 |
ctct |
322 |
Q |
| |
|
|||| |
|
|
| T |
29954458 |
ctct |
29954455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 51369705 - 51369977
Alignment:
| Q |
29 |
atgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctct |
128 |
Q |
| |
|
||||||||||||||| | ||| ||| |||| || |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||| | ||| ||| |
|
|
| T |
51369705 |
atgagctaagattttgatctggggtacccaggttttccaaacaattccacgttcttttgttctttcctcgaatccttgaggtaattcagatacaccgtct |
51369804 |
T |
|
| Q |
129 |
ttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaa |
228 |
Q |
| |
|
|| ||| ||||||| |||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||| ||| ||||| |||| || |||| |
|
|
| T |
51369805 |
ttacgatctttcaaagcccaaaagaaaggtaacccagaaagttcaattccatgagctaactcagttaaatcttgttgatctaactttgactcgcttccaa |
51369904 |
T |
|
| Q |
229 |
atccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgtt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||| | ||||| | ||||||||||| ||||| |
|
|
| T |
51369905 |
atccaatgtaaacaacagaagatgattcttttgagtccaaccatgccttgatgtggacccaatcagggttgtt |
51369977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 11532069 - 11531781
Alignment:
| Q |
21 |
attgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtg |
120 |
Q |
| |
|
|||| |||||| |||||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11532069 |
attgatccatgtgctaagatcttaagttgtggtgcccatgttttccaaacaattccacgttcttttgttctttcctcaaattctttaggtaattcaagtg |
11531970 |
T |
|
| Q |
121 |
taccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactc |
220 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| ||| ||||| ||||| | ||| ||| |
|
|
| T |
11531969 |
taccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattccatgagctaactcaattagatcttgttgacttattttcgtctc |
11531870 |
T |
|
| Q |
221 |
actcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||||||| | ||||| ||||||| |
|
|
| T |
11531869 |
gctcccaaatccaatgtaaacaacagaagacgattcttttgaatccaaccatgccttgattttcatccaatcaaggttgttttcttcct |
11531781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 12846736 - 12846433
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
||||||||||||| | |||||| |||||||| ||||||||||| |||||||||||||| |||||||| |||| || || ||||||| |||||| ||||| |
|
|
| T |
12846736 |
caattgctccatgggataagatcttaagctggggtgcccatgttttccaaacaattccacgttctttggttcgatcttcgaatcctttaggtaactcaag |
12846637 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
|||||||| ||| || || ||||||| |||||||||||| |||| ||||||||||||||||| ||| || || |||| ||||| || | ||| ||||| |
|
|
| T |
12846636 |
tgtacccttttttaggtttttcaaagcccaaaagaaaggtaacctagaaagctcaattccatgagctaattcggttagatctttttgcgttaacctcaac |
12846537 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
12846536 |
tcgctcccaaatccaatgtaaacaacggaagatgattctcttgaatccagccatttttttattttcaaccaatcaggatggttctcttcctcctcatcgt |
12846437 |
T |
|
| Q |
319 |
ctct |
322 |
Q |
| |
|
|||| |
|
|
| T |
12846436 |
ctct |
12846433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 14589181 - 14588902
Alignment:
| Q |
19 |
caattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaag |
118 |
Q |
| |
|
|||||| |||||||| |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||| |
|
|
| T |
14589181 |
caattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaag |
14589082 |
T |
|
| Q |
119 |
tgtaccctctttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaac |
218 |
Q |
| |
|
| ||||||||| |||| || |||| ||||||||| || |||| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||| || |
|
|
| T |
14589081 |
tacaccctctttaagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgac |
14588982 |
T |
|
| Q |
219 |
tcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggatt |
298 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
14588981 |
tcgctcccaaatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccattcaggatt |
14588902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 14622830 - 14622560
Alignment:
| Q |
28 |
catgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctc |
127 |
Q |
| |
|
|||||| |||||| |||| ||| |||||||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||| |||||| |
|
|
| T |
14622830 |
catgagttaagatcttaaactggggtgcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctc |
14622731 |
T |
|
| Q |
128 |
tttcagattcttcaaagtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactccca |
227 |
Q |
| |
|
||| |||| || |||| ||||||||| || |||| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||| |||| |||||| |
|
|
| T |
14622730 |
tttaagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgactcgctccca |
14622631 |
T |
|
| Q |
228 |
aatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggatt |
298 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
14622630 |
aatccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggatt |
14622560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University