View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_15 (Length: 331)
Name: NF8211_low_15
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 2563498 - 2563793
Alignment:
| Q |
19 |
cagaagacatggatactccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttc |
118 |
Q |
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| T |
2563498 |
cagaagacatggatactccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttc |
2563597 |
T |
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| Q |
119 |
aattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaagtattattatatagtttattaataat |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
2563598 |
aattgtctttaagaaaaaagataccaaatattcgtcgaagctattaagacattcaaaatctgtgagcaattcaag---tattatatagtttat---taat |
2563691 |
T |
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| Q |
219 |
tgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacaggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563692 |
tgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgattttgctgacaagtatagaggcacctacacaggtt |
2563791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 2573271 - 2573445
Alignment:
| Q |
19 |
cagaagacatggatactccaagaacactttacaagattgatgctaattcccctggaactgaggctgcagctgaggctgctgctgcactttcagctgcttc |
118 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
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| T |
2573271 |
cagaagacatggatacaccaagaacaacttacaagattgattcaaattcccctggaactgaggctgcagctgaggctgctgccgctctttctgctgcttc |
2573370 |
T |
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| Q |
119 |
aattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgagcaattcaag |
193 |
Q |
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| T |
2573371 |
aattgtctttaagaaaacagatatcaattattcatccaagctattaagccagtcaaaatctgtaagcaattcaag |
2573445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 2573586 - 2573628
Alignment:
| Q |
264 |
tatgttttgtagttgtttgattttgctgacaagtatagaggca |
306 |
Q |
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||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggca |
2573628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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