View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_18 (Length: 310)
Name: NF8211_low_18
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_18 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 24493766 - 24493480
Alignment:
| Q |
8 |
caatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgccattcagaaga |
107 |
Q |
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| T |
24493766 |
caatgagattagacgctgtgtttttaggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacaccattcagaaga |
24493667 |
T |
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| Q |
108 |
agccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatg |
207 |
Q |
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| T |
24493666 |
agccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatg |
24493567 |
T |
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| Q |
208 |
gatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg |
294 |
Q |
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| T |
24493566 |
gatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg |
24493480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 93116 - 92975
Alignment:
| Q |
8 |
caatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgccattcagaaga |
107 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
93116 |
caatgagattagacgctgtgttttttggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcactccattcagaaga |
93017 |
T |
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| Q |
108 |
agccattgcttgtgatacacatgtaggttcaagcgatgatgg |
149 |
Q |
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| T |
93016 |
agccattgcttgtgatacacatgtaggttcaagcgatgatgg |
92975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 92951 - 92845
Alignment:
| Q |
188 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
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| Q |
288 |
aagcgtg |
294 |
Q |
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| T |
92851 |
aagcgtg |
92845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 92976 - 92945
Alignment:
| Q |
90 |
ggcacgccattcagaagaagccattgcttgtg |
121 |
Q |
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| T |
92976 |
ggcacgccattcagaagaagccattgcttgtg |
92945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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