View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_19 (Length: 310)
Name: NF8211_low_19
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_19 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 8039 - 8305
Alignment:
| Q |
13 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcatggactgtgttgtttgtgcagtttgtcctagttgctaaggtgctatgtggta |
112 |
Q |
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| T |
8039 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcgtggactgtgttgtttgtgcggtttgtcctagttgctaaggcgctctgtggta |
8138 |
T |
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| Q |
113 |
ctgcttgttttcttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggttgtttccttgtgtggctcgctagcttatctcctatagcta |
212 |
Q |
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| T |
8139 |
ctgcttgttttcttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgttt---------gctcgctagcttatctcctatagctg |
8229 |
T |
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| Q |
213 |
ctg-tttgtggtgtttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagat |
290 |
Q |
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| T |
8230 |
ctgatacaaggag---gggctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagat |
8305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 30014245 - 30013967
Alignment:
| Q |
13 |
cagagatggggaatttgatttttctggtggtttttgttatctctgtcatggactgtgttgtttgtgcagtttgtcctagttgctaaggtgctatgtggta |
112 |
Q |
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| T |
30014245 |
cagagatggggaatttgatttttctagtggtttttgttatctctatcgtggactgtgttgtttgtgcggtttgtcctagtagct---gtgcggtttatct |
30014149 |
T |
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| Q |
113 |
ctg-cttgttttc---ttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggttgtttccttgtgtggctcgctagcttatctcctata |
208 |
Q |
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| T |
30014148 |
ctgtcgtgaatttgatttttcttcacctgtggtgtccccttctttcgctgatacaaggaggggctgtttccttgtgtggcttgctagcttatctcctata |
30014049 |
T |
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| Q |
209 |
gctactgtttgtggtgtttttgctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagat |
290 |
Q |
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| T |
30014048 |
gctgctgtttgtggtatttttgctgttacagcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagat |
30013967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 30073599 - 30073554
Alignment:
| Q |
242 |
tgctgatttgttctttttgtaactagttcttttgtttattctgata |
287 |
Q |
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| T |
30073599 |
tgctgatttgttctttttgtaactagttcttttgtttattctgata |
30073554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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