View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8211_low_2 (Length: 755)

Name: NF8211_low_2
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8211_low_2
NF8211_low_2
[»] chr7 (16 HSPs)
chr7 (73-740)||(27243223-27243888)
chr7 (422-739)||(27249193-27249515)
chr7 (467-701)||(27304548-27304783)
chr7 (293-557)||(27281992-27282251)
chr7 (458-566)||(27296451-27296559)
chr7 (1-58)||(27243871-27243928)
chr7 (293-377)||(27296600-27296684)
chr7 (273-369)||(27272105-27272201)
chr7 (302-357)||(27249553-27249608)
chr7 (301-371)||(27302026-27302096)
chr7 (301-371)||(27305044-27305114)
chr7 (486-700)||(27220387-27220601)
chr7 (459-520)||(27271918-27271979)
chr7 (295-366)||(27158650-27158721)
chr7 (147-188)||(27249715-27249756)
chr7 (1-57)||(27249804-27249861)
[»] chr1 (7 HSPs)
chr1 (459-713)||(14889614-14889865)
chr1 (233-386)||(14883695-14883841)
chr1 (100-386)||(14889225-14889492)
chr1 (459-585)||(14883963-14884089)
chr1 (1-58)||(14883537-14883595)
chr1 (653-739)||(14884154-14884240)
chr1 (139-190)||(14883636-14883687)


Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 73 - 740
Target Start/End: Complemental strand, 27243888 - 27243223
Alignment:
Q  73 atctatattgaatattttgatttcatatgaaacatttcagattttatttaaggaaaatcatatactgtgatacctagtggggattcagttacaacttata 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  27243888 atctatattgaatattttgatttcatatgaaacatttcagattttatttaaggaaaattatatattgtgatccctagtggggattcagttacaacttata 27243789  T
Q  173 accggagagattaagccaaactttgnnnnnnnaagagtaaagtcttcccctttactctactctgccggtattggttattaccaaaaaccaattattactt 272  Q
    |||||||||||||||||||||||||       ||||||||| ||||||||||||||||     |||||||||||||||||||| ||||||||||||||||    
T  27243788 accggagagattaagccaaactttgtttttttaagagtaaaatcttcccctttactct-----gccggtattggttattaccataaaccaattattactt 27243694  T
Q  273 tattaattatttattaaccgccaaccccgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatctg 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27243693 tattaattatttattaaccgccaaccccgcaagctgctcagtactaatttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatcta 27243594  T
Q  373 ttactgtttttcttctagttcctataaaaaa---cacacatgtaatctagttacacagcatattatataaattttacgaaatagtgtgcatatgaaatag 469  Q
    |||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27243593 ttactgtttttcttctagttcctataaaaaaacacacacatgtagtctagttacacagcatattatataaattttacgaaatagtgtgcatatgaaatag 27243494  T
Q  470 aaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttaggcatggaagcagc 569  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27243493 aaaaggagggttgatggtgagagatgtacttgctgcaatccatatcagggctaatctcatagcccaagtcaacaccacagtctttagccatggaagcagc 27243394  T
Q  570 ggcaggaagattgagtccagatatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagcc 669  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27243393 ggcaggaagattgagtccaggtatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagcc 27243294  T
Q  670 ttaaccgcattgcaacatggttcagggggagggggtgaacctgggtgtgttacgtactcaaggcatggtgt 740  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27243293 ttaaccgcattgcaacatggttcagggggagggggtgaacctgggtgtgttacgtactcaaggcatggtgt 27243223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 422 - 739
Target Start/End: Complemental strand, 27249515 - 27249193
Alignment:
Q  422 acacagcatattatataaattttacga--aatagtgtgcatatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcaggg 519  Q
    |||||||| |||||||||||||||||   |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  27249515 acacagcagattatataaattttacgcgtaataatgtacatatgaaatagaaaaggagggttgatggtgagagatgtacttgttgcagtccatgttaggg 27249416  T
Q  520 ctaatctcatagcccaagtcaacaccacagtctttaggcatggaagcagcggcaggaagattgagtccagatatgtcgcctatcatggatttgacgcaac 619  Q
    |||||   |||||| | ||||||||||||||||||||| | |||||||  |||||||||||||||||||| |||| |||| ||||||||||||| |||||    
T  27249415 ctaataatatagcctatgtcaacaccacagtctttagggagggaagcaatggcaggaagattgagtccaggtatgccgcccatcatggatttgaggcaac 27249316  T
Q  620 tgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagccttaaccgcattgcaacatggttcagggggag---ggggtgaacctgggtg 716  Q
     ||||  ||||||||||||||||| ||| | || |||||||| || || ||||||||||||||||||||||   |||||||    ||||| |||||||||    
T  27249315 cgcaaacatctcgacgatcttgggtagttttggattggccatttaaagtcttaaccgcattgcaacatggtggtgggggagagatgggtggacctgggtg 27249216  T
Q  717 tgttacgtactcaaggcatggtg 739  Q
    ||||||||||  || ||||||||    
T  27249215 tgttacgtacggaacgcatggtg 27249193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 467 - 701
Target Start/End: Complemental strand, 27304783 - 27304548
Alignment:
Q  467 tagaaaaggagggttgatggtgagagatgtac----ttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttaggcatgg 562  Q
    ||||||| ||||||||||||||||||||||||    |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| | ||    
T  27304783 tagaaaaagagggttgatggtgagagatgtacgtacttgctgcagtccatgtcagggctaatcacatagcccaagtcaacaccacactctttagggaggg 27304684  T
Q  563 aagcagcggcaggaagattgag-tccagatatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccat 661  Q
     |||| |||||||||||||||| |  ||||  |||    ||||||||||||| ||||| ||||  ||||||||||||| ||||||| |||| ||||||||    
T  27304683 tagcaacggcaggaagattgagtttgagattggtc----atcatggatttgaggcaaccgcaaacatctcgacgatctaggggagtttgggattggccat 27304588  T
Q  662 gtatagccttaaccgcattgcaacatggttcagggggagg 701  Q
    ||| || ||||| | |||||||||||||||||||||||||    
T  27304587 gtaaagtcttaatcccattgcaacatggttcagggggagg 27304548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 293 - 557
Target Start/End: Complemental strand, 27282251 - 27281992
Alignment:
Q  293 ccaaccccgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatctgttactgtttttcttctagtt 392  Q
    |||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||     | |     
T  27282251 ccaacccttcaagctgctcaatactagtttatcctgcaattagtaaagtgaaattgatattagttttctttataaatctattacttttttt-----aata 27282157  T
Q  393 cctataaaaaacacacatgtaa---tctagttacacagcatattatataaattttacgaaatagtgtgcatatgaaatagaaaaggagggttgatggtga 489  Q
    |||| || ||| |    |||||   | ||   |||| |||||||||||| |||||| | |||| |||  ||||||||||||||| |||||||||||||||    
T  27282156 cctaaaacaaatat---tgtaaatgtatatcaacacggcatattatatatattttatggaataatgtatatatgaaatagaaaaagagggttgatggtga 27282060  T
Q  490 gagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttagg 557  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | || | |||||||| |||||||    
T  27282059 gagatgtacttgctgcagtccatgccagggctaatctcatagcctatgttagcaccacagactttagg 27281992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 458 - 566
Target Start/End: Complemental strand, 27296559 - 27296451
Alignment:
Q  458 catatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttagg 557  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | || | |||||||| |||||||    
T  27296559 catatgaaatagaaaaatagggttgatggtgagagacgtacttgctgcagtccatgtcagggctaatctcatagcctatgttagcaccacagactttagg 27296460  T
Q  558 catggaagc 566  Q
     | ||||||    
T  27296459 gagggaagc 27296451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27243928 - 27243871
Alignment:
Q  1 atgtaagaattaagagagatggcgctaaatccaaatgtccatctatattgaatatttt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27243928 atgtaagaattaagagagatggcgctaaatccaaatgtccatctatattgaatatttt 27243871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 27296684 - 27296600
Alignment:
Q  293 ccaaccccgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatctgttact 377  Q
    |||||||  ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  27296684 ccaacccttcaagcagctcaatactagtttatcctgcaattagtaaagtgaaattgatattagttttctttataaatctattact 27296600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 369
Target Start/End: Complemental strand, 27272201 - 27272105
Alignment:
Q  273 tattaattatttattaaccgccaaccccgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaat 369  Q
    ||||| ||||| ||||| | |||||||  ||||||||||| ||||||  |||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  27272201 tattacttattcattaagcaccaacccttcaagctgctcaatactagggtaccctgcaattagtatagtgaaattgatattagttttcgttataaat 27272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 27249608 - 27249553
Alignment:
Q  302 caagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagtt 357  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  27249608 caagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt 27249553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 27302096 - 27302026
Alignment:
Q  301 gcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatct 371  Q
    |||||||||||  | ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  27302096 gcaagctgctcgattctagtttaccctgcaatgagtaaagcgaaattgacattagttttctttacaaatct 27302026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 27305114 - 27305044
Alignment:
Q  301 gcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatct 371  Q
    |||||||||||| | ||||||||||||||||| ||||||| |||| ||| |||||||||| ||||||||||    
T  27305114 gcaagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattacaaatct 27305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 700
Target Start/End: Complemental strand, 27220601 - 27220387
Alignment:
Q  486 gtgagagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttaggcatggaagcagcggcaggaagattgagt 585  Q
    ||||||||| |||||||| || ||| ||| ||| |||||   |||||| | ||||||||| ||||||||||  | |||||||  ||| ||||||||||||    
T  27220601 gtgagagatttacttgctacagtccgtgttaggactaataatatagcctatgtcaacaccgcagtctttagcgacggaagcaaaggctggaagattgagt 27220502  T
Q  586 ccagatatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagccttaaccgcattgcaac 685  Q
    |||| |||| || | || |  ||||||| ||||| ||||  ||   |||||||||| | ||| | || ||||| || || || |||||||  ||||||||    
T  27220501 ccaggtatgccggccataagagatttgaggcaaccgcaaacatgatgacgatcttgcgtagttttggcttggctatttaaagtcttaaccctattgcaac 27220402  T
Q  686 atggttcagggggag 700  Q
    |||||| ||||||||    
T  27220401 atggttgagggggag 27220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 459 - 520
Target Start/End: Complemental strand, 27271979 - 27271918
Alignment:
Q  459 atatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcagggc 520  Q
    ||||||||||||||| ||||||||||||||||||||||||  | |||| ||||||| |||||    
T  27271979 atatgaaatagaaaaagagggttgatggtgagagatgtacgagttgcagtccatgttagggc 27271918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 27158721 - 27158650
Alignment:
Q  295 aaccccgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttaca 366  Q
    ||||| |||||||||||| ||||| ||||||||||||| || ||||| ||  ||| ||||||||||||||||    
T  27158721 aaccctgcaagctgctcaatactaatttaccctgcaatgagcaaagtaaatatgacattagttttctttaca 27158650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 27249756 - 27249715
Alignment:
Q  147 tagtggggattcagttacaacttataaccggagagattaagc 188  Q
    |||||||||||||||||||||||| ||||| ||| |||||||    
T  27249756 tagtggggattcagttacaacttacaaccgtagaaattaagc 27249715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27249861 - 27249804
Alignment:
Q  1 atgtaagaattaagagagatggcgctaaatccaaatgtccatc-tatattgaatattt 57  Q
    |||||||||||||||||||||    |||||| ||||||||||| ||||||||||||||    
T  27249861 atgtaagaattaagagagatgattgtaaatcaaaatgtccatcatatattgaatattt 27249804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 8e-54; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 459 - 713
Target Start/End: Original strand, 14889614 - 14889865
Alignment:
Q  459 atatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttaggc 558  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||||||||     
T  14889614 atatgaaatagaaaaagagggttgatggtgagagatatacttgctgcagtccatgtcagggctaatcacatagccaatgtcaacaccacagtctttaggg 14889713  T
Q  559 atggaagcagcggcaggaagattgagtccagatatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggc 658  Q
    | ||||||| |||||||||||||||||   |   ||  ||| |  |||||||||| ||||| ||||  |||||||||||||||  ||||  ||| ||||     
T  14889714 agggaagcaacggcaggaagattgagtttgggattg--gcc-acaatggatttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggt 14889810  T
Q  659 catgtatagccttaaccgcattgcaacatggttcagggggagggggtgaacctgg 713  Q
    ||| || || ||||||| |||||||||||||||||||||||||||||| ||||||    
T  14889811 catttaaagtcttaaccccattgcaacatggttcagggggagggggtggacctgg 14889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 233 - 386
Target Start/End: Original strand, 14883695 - 14883841
Alignment:
Q  233 tctgccggtattggttattaccaaaaaccaattattactttattaattatttattaaccgccaaccccgcaagctgctcagtactagtttaccctgcaat 332  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||       |||  |||||| ||||||||||||||||||||||||||||||||    
T  14883695 tctgtcggtattggttattaccaaaaaccaattattactttattcatta-------accttcaaccctgcaagctgctcagtactagtttaccctgcaat 14883787  T
Q  333 tagtaaagtgaaattgatattagttttctttacaaatctgttactgtttttctt 386  Q
    ||||||| ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  14883788 tagtaaaatgaaattgatattagttttctgtacaaattttttactgtttttctt 14883841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 100 - 386
Target Start/End: Original strand, 14889225 - 14889492
Alignment:
Q  100 tgaaacatttcagattttatttaaggaaaatcatatactgtgatacctagtggggattcagttacaacttataaccggagagattaagccaaactttgnn 199  Q
    |||||||||||||||||||||| |     || |||||  ||||| |||||||||||||||||||||| ||| |||| |||| |||||||  | ||||       
T  14889225 tgaaacatttcagattttatttta-----attatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc--atctttttt 14889317  T
Q  200 nnnnnaagagtaaagtcttcccctttactctactctgccggtattggttattaccaaaaaccaattattactttattaattatttattaaccgccaaccc 299  Q
         |||||||||||| ||| ||||| |||     | || |||||||||||||| ||||||||||||||||||||| ||||       | |  ||||||    
T  14889318 tttataagagtaaagtcatcctctttattct-----gtcgatattggttattaccgaaaaccaattattactttattcatta-------agcttcaaccc 14889405  T
Q  300 cgcaagctgctcagtactagtttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatctgttactgtttttctt 386  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  14889406 tgcaagctgctcagtactagtttaccctgcaattagtaaaatgaaattgatattagttttctttacaaattttttactgtttttctt 14889492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 459 - 585
Target Start/End: Original strand, 14883963 - 14884089
Alignment:
Q  459 atatgaaatagaaaaggagggttgatggtgagagatgtacttgctgcaatccatgtcagggctaatctcatagcccaagtcaacaccacagtctttaggc 558  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| | |||||||||||||||     
T  14883963 atatgaaatagaaaaagagggttgatggtgagagatatacttgctgcagtccatgtcagggctaatcacatagcccatgtccataccacagtctttaggg 14884062  T
Q  559 atggaagcagcggcaggaagattgagt 585  Q
    | |||||||  ||||| || |||||||    
T  14884063 agggaagcaagggcagaaatattgagt 14884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14883537 - 14883595
Alignment:
Q  1 atgtaagaattaagagagatggcgctaaatccaaatgtccatc-tatattgaatatttt 58  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||| ||||||||    
T  14883537 atgtaagaattaagagagatggcagtaaatccaaatgtccatcatatatttaatatttt 14883595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 739
Target Start/End: Original strand, 14884154 - 14884240
Alignment:
Q  653 tttggccatgtatagccttaaccgcattgcaacatggttcagggggagggggtgaacctgggtgtgttacgtactcaaggcatggtg 739  Q
    ||||||||| || || ||||  | ||||||||||||| |||||||||||||||| |||||||| ||||| ||||  || ||||||||    
T  14884154 tttggccatctaaagtcttatacccattgcaacatgggtcagggggagggggtggacctgggtttgttaggtacggaatgcatggtg 14884240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 14883636 - 14883687
Alignment:
Q  139 gtgatacctagtggggattcagttacaacttataaccggagagattaagcca 190  Q
    ||||| |||||||||||||||||||||||||| ||| | ||| |||||||||    
T  14883636 gtgatccctagtggggattcagttacaacttacaactgaagaaattaagcca 14883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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