View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_20 (Length: 300)
Name: NF8211_low_20
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 52357838 - 52357996
Alignment:
| Q |
1 |
caactgttcactttagtccttatgttgttcagtgaattgcatttgcaagnnnnnnngtcagatcacagtacacatcttcctccatttgatgacatgacgt |
100 |
Q |
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| T |
52357838 |
caactgtttactttagtccttatgttgttcagtgaattgcatttgcaagtttttttgtcagatcacagtacacatcttcctccatttgatgacatgacat |
52357937 |
T |
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| Q |
101 |
acatgacacttatttaataaacatgataacttactctatccatccctaaatataagact |
159 |
Q |
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| T |
52357938 |
acatgacacttatttaataaacatgataacttactctatccatccctaaatataagact |
52357996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 52358022 - 52358095
Alignment:
| Q |
187 |
atacgacacatttcaaattgttcactgcattaactatttctttacataaataaccctatttattttacacatgg |
260 |
Q |
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| T |
52358022 |
atacgacacatttcaaattgttcattgcattaactatttctttacataaataaccctatttattttacacatgg |
52358095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 44581007 - 44580966
Alignment:
| Q |
214 |
cattaactatttctttacataaataaccctatttattttaca |
255 |
Q |
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| T |
44581007 |
cattaactatttctttacatacatacccctatttattataca |
44580966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 18641330 - 18641290
Alignment:
| Q |
215 |
attaactatttctttacataaataaccctatttattttaca |
255 |
Q |
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| T |
18641330 |
attaattatttctttacatacataaccctatttattataca |
18641290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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