View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_21 (Length: 296)
Name: NF8211_low_21
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 43748637 - 43748360
Alignment:
| Q |
11 |
agaatatagactgaattttgtccgtgcataggaaagtatgttctcttctttctccatttggaaaccttatgagtatctgcaacaaaaagtttgacaaaca |
110 |
Q |
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| T |
43748637 |
agaaaatagactgaattttgtccgtgcataggaaagtatgttctcttctttctccatttggaaaccttatgagtatctgcaacaaaaagtttgacaaaca |
43748538 |
T |
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| Q |
111 |
ta------ctcaagttcaacacaagttcataatttttgacatgtttctttgttgtgcaagacta-aatttattacctgtgcaacttgagtcgcattcccg |
203 |
Q |
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| T |
43748537 |
tatatatactcaagttcaacacaagttcataatttttgacatgtttctttgttgtgcaagactacaatttattacctgtgcaacttgagtcgcgttcccg |
43748438 |
T |
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| Q |
204 |
ctacttgtgattcccttgccattcttttcaatagtggatccatttcctttgttattctcacgaaatttaccaacattg |
281 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43748437 |
ctacttgtgattcccttgccattcttttcaccagtggatccatttcctttgttattctcacgaaatttactaacattg |
43748360 |
T |
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