View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_22 (Length: 278)
Name: NF8211_low_22
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 176
Target Start/End: Original strand, 4247750 - 4247900
Alignment:
| Q |
34 |
cggtagccgcaagctcgcaacccaatgtttgatctgtggcatggagagatcaaactccacatgtattcttataagctaatactatctcaatcctcatatc |
133 |
Q |
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| T |
4247750 |
cggtagccgcaagctcgcaacccaatgtttgatctgtggcatggagagatcaaactccacatgtattcttataagctaatactatctcaatcctcatatc |
4247849 |
T |
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| Q |
134 |
ttca--------tatataaataataaaggaaaattcatctgaatgatttat |
176 |
Q |
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| T |
4247850 |
ttcatatatacgtatataaataataaaggaaaattcatctgaatgatttat |
4247900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 4247896 - 4247924
Alignment:
| Q |
233 |
tttattacaagtaatcaatacacgtacat |
261 |
Q |
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| T |
4247896 |
tttattacaagtaatcaatacacgtacat |
4247924 |
T |
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