View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_26 (Length: 244)
Name: NF8211_low_26
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 40721677 - 40721439
Alignment:
| Q |
9 |
ataaactggtatccttttctaccatttgaagctgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagacagatttcata |
108 |
Q |
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| T |
40721677 |
ataaattgttatccttttctaccatttgaagctgcttgaaagaattttcacatctgacctggctatagcagaatcaaatatggagaagacagatttcata |
40721578 |
T |
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| Q |
109 |
ttgaattttc--atatcatatattttggttagattgtttcagaaaaagagagaaaagaagacagata---nnnnnnnaaaacaaaagatatgctttttaa |
203 |
Q |
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| T |
40721577 |
ttgaattttcatatatcatatattttggttagactgtttcagaaaaagaaagaaaagaagacatatattttttttttaaaacaaaagatatgctttttaa |
40721478 |
T |
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| Q |
204 |
ttttaattaaaaaggaagtaaacctacataagaataatc |
242 |
Q |
| |
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| T |
40721477 |
ttttaattaaaaaggaagtaaacctacataagaataatc |
40721439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 16003474 - 16003228
Alignment:
| Q |
1 |
ctcttacgataaactggtatccttttctaccatttgaagctgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagacag |
100 |
Q |
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| T |
16003474 |
ctcttaggataaactggtatcattttctaccatttgaagctgcttgaaagaattttcacatcatacctggctatagcagaatcaattatggagaagacag |
16003375 |
T |
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| Q |
101 |
atttcatattgaattttcatatcatatattttggttagattgtttcagaaaaagagagaaaagaagac-----agatannnnnnnaaaacaaaagatatg |
195 |
Q |
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| T |
16003374 |
atttcatattgaattttcatatcatatattttggttagactgttttagaaaaagaaataaaagaagacaaaaaaaaaaaaaatttaaaacaaaagatatg |
16003275 |
T |
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| Q |
196 |
ctttttaattttaattaaaaaggaagtaaacctacataagaataatc |
242 |
Q |
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| T |
16003274 |
ctttttaattttaattaaaaaggaagtgaacctacataagaataatc |
16003228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26794711 - 26794489
Alignment:
| Q |
1 |
ctcttacgataaactggtatccttttctaccatttgaagctgcttgaaagaattttcacatcagacctggctatagcagaatcaaatatggagaagacag |
100 |
Q |
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| T |
26794711 |
ctcttaggataaactggtatccttt-ctaccatttgaagctgcttgtaagaattttcacatcagacctggctatagcagaatcaaatatggagaagacag |
26794613 |
T |
|
| Q |
101 |
atttcatattgaattttcatatcatatattttggttagattgtttcagaaaaagagagaaaagaagaca-----gatannnnnnnaaaacaaaagatatg |
195 |
Q |
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| T |
26794612 |
atttcatattgaattttcatatcatatattttggttagattgtttcagaaaaagaaagaaaagaagacaaattttattttttttttaaacaaaagatatg |
26794513 |
T |
|
| Q |
196 |
ctttttaattttaattaaaaagga |
219 |
Q |
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| T |
26794512 |
ctttttaattttaattaaaaagga |
26794489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 19397718 - 19397621
Alignment:
| Q |
1 |
ctcttacgataaactggtatccttttctaccatttgaagctgcttgaaagaattttcacatcaga-----cctggctatagcagaatcaaatatggag |
93 |
Q |
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| T |
19397718 |
ctcttaggataaattggtatcttattctaccatttgaagctgcttgaaagaattttcatatcagatgcattgtggctatagcagaatcaaatatggag |
19397621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 8530996 - 8531078
Alignment:
| Q |
16 |
ggtatccttttctaccatttgaagctgcttgaaagaattttcacatcaga-----cctggctatagcagaatcaaatatggag |
93 |
Q |
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| T |
8530996 |
ggtatcttattctaccatttgaagctgctttaaagaattttcatatcagatgcattgtggctgtagcagaatcaaatatggag |
8531078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 5155241 - 5155201
Alignment:
| Q |
16 |
ggtatccttttctaccatttgaagctgcttgaaagaatttt |
56 |
Q |
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| T |
5155241 |
ggtatcttattctaccatttgaagttgcttgaaagaatttt |
5155201 |
T |
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