View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8211_low_28 (Length: 235)
Name: NF8211_low_28
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 8772677 - 8772468
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8772677 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
8772578 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
211 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
8772577 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaa |
8772478 |
T |
|
| Q |
212 |
gttctctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
8772477 |
gttctctctg |
8772468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 7558027 - 7558236
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7558027 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
7558126 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
211 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
7558127 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaa |
7558226 |
T |
|
| Q |
212 |
gttctctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
7558227 |
gttctctctg |
7558236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 19721754 - 19721963
Alignment:
| Q |
12 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19721754 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcataaatcatgaatgttgctggttatggacaacaacaatcatcgcagtcttg |
19721853 |
T |
|
| Q |
112 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
19721854 |
tttctactctgctcaatttgattgaagctggctgctgatatatttattttcctattgtcttataatttttggctagctaatttaagactcaataggaaaa |
19721953 |
T |
|
| Q |
212 |
gttctctctg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
19721954 |
gttctctctg |
19721963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 35808065 - 35808013
Alignment:
| Q |
124 |
tcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataa |
176 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
35808065 |
tcaaactgattgaagttggcagctgatatatttagtttcctattgtcttataa |
35808013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University