View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_31 (Length: 220)
Name: NF8211_low_31
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_31 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 42435524 - 42435316
Alignment:
| Q |
4 |
tcaaaatcttaaggcaatagatttatggatcctgttatttcacacttgcaagttgcaaatcaacattttccactagtgttattagccc-tgcttacaaat |
102 |
Q |
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| T |
42435524 |
tcaaaaccttaaggtaatagatt-atggatcctcttacttcacacttgcaa-------atcaacattttccactagtgttattggcccctacttacaaat |
42435433 |
T |
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| Q |
103 |
gttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttttatacaagacttccagaaatataaatacgagtatttcaaaaatttatt |
202 |
Q |
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| T |
42435432 |
gttaagatttcaaggtgttttttgaaatttgtaa-aaaatcctgaaatgttttatacaagacttccagaaatataaatacgagtatttcaaaaatttatt |
42435334 |
T |
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| Q |
203 |
caaatcaagaaatatttt |
220 |
Q |
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|||||||||||||||||| |
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| T |
42435333 |
caaatcaagaaatatttt |
42435316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 28293411 - 28293563
Alignment:
| Q |
69 |
ttttccactagtgttattagccc-tgcttacaaatgttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttttatacaagacttc |
167 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||||||||| | ||| |
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| T |
28293411 |
ttttccactagtgttattggcccctgcttacaaatgttaggatttcgttgtgttttttgaaatttgtaaaaaaatcctgaaacgttttatacgggtcttt |
28293510 |
T |
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| Q |
168 |
cagaaatataaatacgagtatttcaaaaatttattcaaatcaagaaatatttt |
220 |
Q |
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| T |
28293511 |
cataaatataaatacgagtatttaaaaaatttattcaaatcgagaaacatttt |
28293563 |
T |
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