View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8211_low_6 (Length: 532)
Name: NF8211_low_6
Description: NF8211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8211_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 25788636 - 25788887
Alignment:
| Q |
20 |
tttccaaagttcatgagaaatcaaccccatctaaaatggcctagacttatccaacaactacattcatggagcaataccaatctggatattgagattcgac |
119 |
Q |
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| T |
25788636 |
tttccaaagttcttgagaaatcaaccccatctaaa-tggcctagacttatccaacaactacattcatggagcaataccaaactggatattgagattcaac |
25788734 |
T |
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| Q |
120 |
tatctggtttatctgaatctttccaataatttcatctcaaatttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattcca |
219 |
Q |
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| T |
25788735 |
tatctggtttatctgaatctttccaataatttcatcacagatttggaaagaccctttgatgatctcaattccaatctatatagccttgaccttcattcca |
25788834 |
T |
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| Q |
220 |
ataaacttgttggaaaaattcctactttcacgaaatatgctgtccgtttggac |
272 |
Q |
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| T |
25788835 |
ataaacttgttggaaaaattcctactttcatgaaatatgctgtccatttggac |
25788887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 25788892 - 25788965
Alignment:
| Q |
445 |
tattcccaagtgtttgacaaaaaggaatagtacactcagagtactaaatcttgctggaaacaagctcacaggtt |
518 |
Q |
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|||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788892 |
tatttccaagtgtttaataaaaaggaatagtacactcagagtactaaatcttgctggaaacaagctcacaggtt |
25788965 |
T |
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