View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_high_3 (Length: 356)
Name: NF8212_high_3
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 338
Target Start/End: Complemental strand, 4591984 - 4591647
Alignment:
| Q |
4 |
tgttcatgtgaaggatccgatccattttttcaaaacaaaataaaaatcatatgtagaatcctatcaaatcttttaggcagaaatactttgcagagattaa |
103 |
Q |
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| T |
4591984 |
tgttcatgtgaaggatccgatccattttttcaaaacaaaataaaaatcatatgtagaatcctatcaaatcttgtaggcagaaatactttgcagagattaa |
4591885 |
T |
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| Q |
104 |
ttgctgagcactgacggtgtaaagcttttttacgcgtagaatcttatcaaatcaccccatgtttat---attttgagatatttaaggaagtaacctaaac |
200 |
Q |
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| T |
4591884 |
ttgctgaaaactgacggtgtaaagcttttttacgcgttgaatcttatcagatcaccccatgtttattatattttgagatatttgaggaagtaacctaaac |
4591785 |
T |
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| Q |
201 |
aattggcattatgatatggcttgattggatgcatgtataaaacagttttacaaccctcgttaaaagacaagggacagatattgtcttgtgcaaattcaaa |
300 |
Q |
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| T |
4591784 |
aattgccattatgacatggcttgattggatgcatgtataaaacagttttacaaccctcgttaaaagacaagggagagatattgtcttgtgcaaattcaaa |
4591685 |
T |
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| Q |
301 |
tacttaatattttcatgatgtgaaaatttggactgatt |
338 |
Q |
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| T |
4591684 |
tatttaatattttcatgatgtgaaaatttggactgatt |
4591647 |
T |
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