View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8212_high_4 (Length: 343)
Name: NF8212_high_4
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_high_4 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 32804630 - 32804965
Alignment:
| Q |
15 |
aaatgaacctttcactgttccctttcttctccctctca-------tgcttccttaagcgctgccgtgaaggtcaatgactccgccgtgatccaccaccac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32804630 |
aaatgaacctttcactgttccctttcttctccctctcacgttttctgcttccttaagcgctgccgtgaaggtcaatgactccgccgtgatccaccaccac |
32804729 |
T |
|
| Q |
108 |
tgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagatcatgtagttcatgaaaacatctctgcttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32804730 |
tgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagatcatgtagttcatgaaaacatctctgcttg |
32804829 |
T |
|
| Q |
208 |
tcatctttcgtccgacatgatgtttcgacaaggctcgttacctccaccacgctgtgtcgaaattggcagaattatggtccttcacggcggcgatgaagca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
32804830 |
tcatctttcgtccgacatgatgtttcgacaaggctcgttacctccaccacgctgtgtcgaaattggcagaattatgggcctttgcggcggcgatgaagca |
32804929 |
T |
|
| Q |
308 |
gtcgagcgaagcagaaaacgtgggaggaagaagaag |
343 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32804930 |
gtcgagggaagcagaaaacgtgggatgaagaagaag |
32804965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 34153313 - 34153397
Alignment:
| Q |
91 |
ccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgctccaaaagagat |
178 |
Q |
| |
|
||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||||| |||| |||||| |||||| |||||| |
|
|
| T |
34153313 |
ccgtgatccgccgccaccgtgtctttgttct---tattactcataaaacatctgaaagaaaaaacaacagagacactccaagagagat |
34153397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 48167271 - 48167237
Alignment:
| Q |
85 |
actccgccgtgatccaccaccactgtgtctttgtt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48167271 |
actccgccgtgatccaccaccaccgtgtctttgtt |
48167237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 7317846 - 7317745
Alignment:
| Q |
67 |
ctgccgtgaaggtcaatgactccgccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgc |
166 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||| || |||| ||||||||||||| |||||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
7317846 |
ctgccatgaagaccaatcactctgccgtgatccgccgccaccgtgtctttgttcta---attactcataaaacatctgaaagaaaaaacaacagagacgc |
7317750 |
T |
|
| Q |
167 |
tccaa |
171 |
Q |
| |
|
||||| |
|
|
| T |
7317749 |
tccaa |
7317745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 17037491 - 17037599
Alignment:
| Q |
67 |
ctgccgtgaaggtcaatgactccgccgtgatccaccaccactgtgtctttgttcttcttattactcacaaaacatctgaaagaaaacacaatagagacgc |
166 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||||| ||| |||||| | |
|
|
| T |
17037491 |
ctgccatgaagaccaatcactctgccgtgatccgccgccaccgtgtctttgttct---tattactcataaaacatctgaaagaaaaaacatcagagacac |
17037587 |
T |
|
| Q |
167 |
tccaaaagagat |
178 |
Q |
| |
|
||||| |||||| |
|
|
| T |
17037588 |
tccaagagagat |
17037599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 46654437 - 46654403
Alignment:
| Q |
85 |
actccgccgtgatccaccaccactgtgtctttgtt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
46654437 |
actctgccgtgatccaccaccactgtgtctttgtt |
46654403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 1253273 - 1253239
Alignment:
| Q |
85 |
actccgccgtgatccaccaccactgtgtctttgtt |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
1253273 |
actccgccgtcatccaccaccactgtgtctttgtt |
1253239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University