View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_high_8 (Length: 243)
Name: NF8212_high_8
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 32804939 - 32805152
Alignment:
| Q |
14 |
agcagagaacgtgggaggaagaagaagtagtagaagaagtctctcaaaacaagtagaataagttactccaaatgcagaaaaagtttgtgttgagaaaccc |
113 |
Q |
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| T |
32804939 |
agcagaaaacgtgggatgaagaagaagtagtagaagtagtctctcaaaacaagtagaataagttactccaaatgcagaaaaagtttgtgttgagaaaccc |
32805038 |
T |
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| Q |
114 |
taacatacagtggtttctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagtagctactagctaatgtttaacctcagtttaagca |
213 |
Q |
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| T |
32805039 |
taacatgcagtggattctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagtagctactagctaatgtttaacctcagtttaagca |
32805138 |
T |
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| Q |
214 |
ctactacaacttac |
227 |
Q |
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|||||||||||||| |
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| T |
32805139 |
ctactacaacttac |
32805152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 32801809 - 32801913
Alignment:
| Q |
80 |
tccaaatgcagaaaaagtttgtgttgagaaaccctaacatacagtggtttctttctctagttcccagatcataaaaagggtaaatggttgtgtcagaagt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32801809 |
tccaaatgcagaaaaagtttgtgttgagaaaccctaacatgcagtggtttctttctctagttcccagatcataaaaaggttaaatggatgtgtcagaaga |
32801908 |
T |
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| Q |
180 |
agcta |
184 |
Q |
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||||| |
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| T |
32801909 |
agcta |
32801913 |
T |
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