View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8212_low_1 (Length: 675)

Name: NF8212_low_1
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8212_low_1
NF8212_low_1
[»] chr2 (18 HSPs)
chr2 (20-661)||(7160712-7161353)
chr2 (566-636)||(7156175-7156245)
chr2 (566-636)||(7168673-7168743)
chr2 (558-636)||(7174356-7174434)
chr2 (577-636)||(6538843-6538902)
chr2 (568-635)||(11237693-11237760)
chr2 (98-236)||(11237232-11237370)
chr2 (568-636)||(7199961-7200029)
chr2 (568-636)||(33026657-33026725)
chr2 (569-643)||(33020314-33020388)
chr2 (558-643)||(13924638-13924723)
chr2 (427-463)||(7200131-7200167)
chr2 (568-620)||(36577366-36577418)
chr2 (427-472)||(7156336-7156381)
chr2 (427-472)||(11237549-11237594)
chr2 (426-471)||(11330001-11330046)
chr2 (427-460)||(33020181-33020214)
chr2 (428-472)||(7174517-7174561)
[»] chr3 (36 HSPs)
chr3 (568-621)||(2442039-2442092)
chr3 (568-643)||(4142110-4142185)
chr3 (568-621)||(4157942-4157995)
chr3 (568-637)||(2456249-2456318)
chr3 (568-620)||(3754600-3754652)
chr3 (568-644)||(9561960-9562036)
chr3 (569-636)||(2631358-2631425)
chr3 (568-619)||(2644362-2644413)
chr3 (568-619)||(2659152-2659203)
chr3 (568-643)||(7324407-7324482)
chr3 (568-643)||(7942485-7942560)
chr3 (569-643)||(2492083-2492157)
chr3 (569-643)||(9594600-9594674)
chr3 (570-640)||(23197014-23197084)
chr3 (569-630)||(768318-768379)
chr3 (568-637)||(771481-771550)
chr3 (568-621)||(2696730-2696783)
chr3 (568-617)||(9608346-9608395)
chr3 (568-617)||(13498224-13498273)
chr3 (424-460)||(2456103-2456139)
chr3 (568-619)||(754609-754660)
chr3 (568-619)||(1891064-1891115)
chr3 (568-643)||(2476634-2476709)
chr3 (568-615)||(2502148-2502195)
chr3 (570-620)||(2459277-2459327)
chr3 (427-460)||(763714-763747)
chr3 (568-621)||(803216-803269)
chr3 (568-621)||(989396-989449)
chr3 (568-621)||(1007461-1007514)
chr3 (568-621)||(1022489-1022542)
chr3 (568-621)||(7432052-7432105)
chr3 (427-460)||(9585288-9585321)
chr3 (568-621)||(12133097-12133150)
chr3 (427-460)||(43991828-43991861)
chr3 (568-644)||(9565804-9565880)
chr3 (424-460)||(12217889-12217925)
[»] chr7 (6 HSPs)
chr7 (426-470)||(24723212-24723256)
chr7 (566-629)||(24723352-24723415)
chr7 (568-621)||(1078158-1078211)
chr7 (572-621)||(3927063-3927112)
chr7 (568-618)||(1421170-1421220)
chr7 (568-644)||(39298977-39299053)
[»] chr5 (7 HSPs)
chr5 (568-620)||(11081813-11081865)
chr5 (568-621)||(23766860-23766913)
chr5 (568-621)||(23816708-23816761)
chr5 (568-623)||(3181717-3181772)
chr5 (568-617)||(20292995-20293044)
chr5 (568-621)||(23769644-23769697)
chr5 (568-621)||(23819492-23819545)
[»] chr6 (12 HSPs)
chr6 (572-629)||(7564741-7564798)
chr6 (571-621)||(370783-370833)
chr6 (572-621)||(176338-176387)
chr6 (578-621)||(1442106-1442149)
chr6 (570-641)||(19119065-19119136)
chr6 (570-641)||(19126359-19126430)
chr6 (567-617)||(9703888-9703938)
chr6 (568-630)||(17368366-17368428)
chr6 (569-619)||(24417486-24417536)
chr6 (572-617)||(9819831-9819876)
chr6 (572-620)||(1470922-1470970)
chr6 (427-467)||(4183150-4183190)
[»] chr1 (4 HSPs)
chr1 (561-617)||(24629213-24629269)
chr1 (568-609)||(23896147-23896188)
chr1 (572-636)||(51381438-51381502)
chr1 (568-632)||(51858606-51858670)
[»] scaffold0044 (1 HSPs)
scaffold0044 (572-643)||(89147-89218)
[»] scaffold0015 (2 HSPs)
scaffold0015 (568-618)||(32330-32380)
scaffold0015 (560-618)||(40382-40440)
[»] chr4 (3 HSPs)
chr4 (574-620)||(55419788-55419834)
chr4 (560-618)||(11032902-11032960)
chr4 (571-621)||(22672125-22672175)


Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 20 - 661
Target Start/End: Complemental strand, 7161353 - 7160712
Alignment:
Q  20 ctctaaacaatcaaagttgggatcacttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccat 119  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161353 ctctaaacgatcaaagttgggatcgcttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccat 7161254  T
Q  120 tcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaag 219  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161253 tcagaaatttactaaattgccctctttgggctatacagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaag 7161154  T
Q  220 gttgttgttgttgattggtatagtgatgacggttctcattatgggcttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaagga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7161153 gttgttgttgttgattggtatagtgatgacggttctcattatgggcttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaagga 7161054  T
Q  320 ttcagaattttccttataccccttttggtgcggatggttcaggaacagttgtctgtggtactattaattggtcgacatctaaaacttggtcggccacttc 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  7161053 ttcagaattttccttataccccttttggtgcggatggttcaggaacagttgtctgtggcactattaattggttgacatctaaaacttggtcggccacttc 7160954  T
Q  420 attgtttattgtttctcttgatttggagaaggagtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctagga 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7160953 attgtttattgtttctcttgatttggagaaggagtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctagga 7160854  T
Q  520 gtgttaagggattgcttgtgcctattttctaatgatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7160853 gtgttaagggattgcttgtgcctattttctaatgatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 7160754  T
Q  620 tccgtgttcctcacatgaaagatcatcctcgttcttggtctc 661  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7160753 tccgtcttcctcacatgaaagatcatcctcgttcttggtctc 7160712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 7156245 - 7156175
Alignment:
Q  566 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  7156245 cagatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatg 7156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 566 - 636
Target Start/End: Complemental strand, 7168743 - 7168673
Alignment:
Q  566 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  7168743 cagacgtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatg 7168673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 7174434 - 7174356
Alignment:
Q  558 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    ||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  7174434 tactttttcagatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 577 - 636
Target Start/End: Original strand, 6538843 - 6538902
Alignment:
Q  577 cttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 635
Target Start/End: Original strand, 11237693 - 11237760
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacat 635  Q
    ||||||||||||||| |||||||||||||||  ||  |||||||||||||||||||||||||| ||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 11237232 - 11237370
Alignment:
Q  98 ctcttgtgtggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatga 197  Q
    ||||| ||||||| ||||||||| | |||||||| ||||  || |||||||   ||||| ||||||| |||  || || | | ||||| |||||||||||    
T  11237232 ctcttttgtggaacccttccattaagaaatttacgaaatcaccatctttggataatccaaaacgagatgggagttacacaatttatggttttggctatga 11237331  T
Q  198 tcatgtaagtgacacttacaaggttgttgttgttgattg 236  Q
    |||||| | ||||| |||||||||||||| |||| ||||    
T  11237332 tcatgtcaatgacatttacaaggttgttgctgtttattg 11237370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 636
Target Start/End: Complemental strand, 7200029 - 7199961
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    ||||||||| |||||||||||| ||||||| |  |||||||| ||| |||||||||||||||| |||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttccttacatg 7199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 33026657 - 33026725
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    ||||||||| |||||||| | |||||||||||  | |||||||||| ||||| ||||||||||||||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatg 33026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 33020314 - 33020388
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    |||| ||| |||||||||| |||||||||||  | |||||||||| ||||| |||||||||| ||||| ||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33020388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 643
Target Start/End: Complemental strand, 13924723 - 13924638
Alignment:
Q  558 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    ||||||| | |||||||||||| ||||||||| ||||||| |||| |  |||| ||||||||||||| |||||  |||| ||||||    
T  13924723 tactttttcggatgtttggcttttgaaggagtttggaaatgatgaattctggattaaattgttccgtcttcctagcatggaagatc 13924638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 463
Target Start/End: Complemental strand, 7200167 - 7200131
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatcgag 463  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7200167 attgtttctcttgatttggagaatgagtcttatcgag 7200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 7156381 - 7156336
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatcgagagctattgc 472  Q
    ||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  7156381 attgtttcttttgatttggagacggagtcttttcgagagatattgc 7156336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 11237549 - 11237594
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatcgagagctattgc 472  Q
    ||||||||||||||||||||||||||  |||||| |||||| ||||    
T  11237549 attgtttctcttgatttggagaaggaaacttatcaagagctgttgc 11237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 11330001 - 11330046
Alignment:
Q  426 tattgtttctcttgatttggagaaggagtcttatcgagagctattg 471  Q
    ||||||||| |||||||||||||||| |||||||||| | ||||||    
T  11330001 tattgtttcacttgatttggagaaggggtcttatcgaaaactattg 11330046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 33020181 - 33020214
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatc 460  Q
    ||||||||||||||||||||||||||||| ||||    
T  33020181 attgtttctcttgatttggagaaggagtcgtatc 33020214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 7174561 - 7174517
Alignment:
Q  428 ttgtttctcttgatttggagaaggagtcttatcgagagctattgc 472  Q
    ||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  7174561 ttgtttctcttcatttggagaatgagtcttatggagagatattgc 7174517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 2442039 - 2442092
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 2442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 4142185 - 4142110
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 4157995 - 4157942
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4157942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 2456249 - 2456318
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 637  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||| || | ||||| ||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatga 2456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 620
Target Start/End: Original strand, 3754600 - 3754652
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 568 - 644
Target Start/End: Complemental strand, 9562036 - 9561960
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 644  Q
    ||||||||| ||||||| |||||||||||| | || |||||||||||||| | | |||||||| ||||| |||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcctaacatgcaagatca 9561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 569 - 636
Target Start/End: Original strand, 2631358 - 2631425
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    |||||||| |||||||||| ||||||||| | || |||||||||||||||| | |||||||| |||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 619
Target Start/End: Complemental strand, 2644413 - 2644362
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 619
Target Start/End: Complemental strand, 2659203 - 2659152
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 7324482 - 7324407
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    ||||||||| |||||||||| || |||||||| || ||||||||||||||||   |||||||| ||||| ||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 7324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 643
Target Start/End: Original strand, 7942485 - 7942560
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    ||||||||| |||||||||||||||| ||||| || ||||||| |||||||| |  ||||||| ||||| ||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 643
Target Start/End: Original strand, 2492083 - 2492157
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||   |||||||| ||||| ||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 2492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 643
Target Start/End: Complemental strand, 9594674 - 9594600
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    |||||||| |||||||  |||| |||||| | || ||||||||||||||||||| ||||||| ||||| ||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttccatgttcctaacatgcaagatc 9594600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 640
Target Start/End: Original strand, 23197014 - 23197084
Alignment:
Q  570 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaag 640  Q
    ||||||||| |||||||| ||||||||| | || ||||||||||||||||| ||| ||||| |||| ||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacataaaag 23197084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 630
Target Start/End: Complemental strand, 768379 - 768318
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 630  Q
    |||||||| ||||||| ||||| |||||| | || ||||||||||||||||||| |||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 637
Target Start/End: Complemental strand, 771550 - 771481
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 637  Q
    ||||||||| |||||||||| ||||||||||  || |||||||||||||||| ||  |||||| ||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgtaccacgttccttacatga 771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 2696783 - 2696730
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| ||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttc 2696730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 617
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    ||||||||| |||||||||| ||||||||||  |||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 617
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    ||||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 2456103 - 2456139
Alignment:
Q  424 tttattgtttctcttgatttggagaaggagtcttatc 460  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2456103 tttattgtttctcttgatttggagaaggagtcatatc 2456139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 619
Target Start/End: Complemental strand, 754660 - 754609
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    ||||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 619
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    ||||||||| ||||||||||  |||||||||| || ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 643
Target Start/End: Original strand, 2476634 - 2476709
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    ||||||||| |||||||  | ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatgcaagatc 2476709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 615
Target Start/End: Original strand, 2502148 - 2502195
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaa 615  Q
    ||||||||| |||||||||||||||||||||| || | ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  570 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    ||||||| |||||||||| ||||||||||| || |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 763747 - 763714
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatc 460  Q
    ||||||||||||||||||||||||||||| ||||    
T  763747 attgtttctcttgatttggagaaggagtcgtatc 763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 803269 - 803216
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||| ||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 989396 - 989449
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttc 989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 1007461 - 1007514
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttc 1007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 1022489 - 1022542
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttc 1022542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 7432105 - 7432052
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||||||  ||||||||| ||||||||||| || || |||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttc 7432052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Complemental strand, 9585321 - 9585288
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatc 460  Q
    ||||||||||||||||||||||||||||| ||||    
T  9585321 attgtttctcttgatttggagaaggagtcgtatc 9585288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 12133097 - 12133150
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||| ||||||||||||||  || || |||||||||||||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttc 12133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 43991828 - 43991861
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatc 460  Q
    |||||||||||||||||||||| |||||||||||    
T  43991828 attgtttctcttgatttggagacggagtcttatc 43991861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 644
Target Start/End: Complemental strand, 9565880 - 9565804
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 644  Q
    ||||||||| ||||||||||||| ||| || | || |||||||||||||||| |  ||||||| ||||  |||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgtacattgttcctaacatacaagatca 9565804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 12217889 - 12217925
Alignment:
Q  424 tttattgtttctcttgatttggagaaggagtcttatc 460  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  12217889 tttattgtttctcttgatttagagaaggagtcatatc 12217925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 24723212 - 24723256
Alignment:
Q  426 tattgtttctcttgatttggagaaggagtcttatcgagagctatt 470  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatt 24723256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 566 - 629
Target Start/End: Original strand, 24723352 - 24723415
Alignment:
Q  566 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 629  Q
    |||| |||||||||||||||||||||  ||||| ||| ||||||||||||||||||| ||||||    
T  24723352 cagaggtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgttcc 24723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 1078211 - 1078158
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||||||||||||||||||  || || |||||||||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 1078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 618  Q
    |||||||||||||||||||| || |||||||| || ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 644
Target Start/End: Original strand, 39298977 - 39299053
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 644  Q
    ||||||||| || ||||||| | ||||||||| || || ||||||||||| | | |||||||| ||||| |||||||    
T  39298977 gatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatca 39299053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 568 - 620
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 23766913 - 23766860
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23766860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 23816761 - 23816708
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 3181717 - 3181772
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccg 623  Q
    |||||||||||||||||||| ||||||||| | || ||||||| ||||||| ||||    
T  3181717 gatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgatccg 3181772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 617
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    ||||||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 23769697 - 23769644
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23769644  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 23819545 - 23819492
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23819492  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 7564798 - 7564741
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 629  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||| |||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcc 7564741  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 571 - 621
Target Start/End: Complemental strand, 370833 - 370783
Alignment:
Q  571 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttc 370783  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 176338 - 176387
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 621
Target Start/End: Complemental strand, 1442149 - 1442106
Alignment:
Q  578 ttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 19119065 - 19119136
Alignment:
Q  570 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 641  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 19126359 - 19126430
Alignment:
Q  570 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 641  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 617
Target Start/End: Complemental strand, 9703938 - 9703888
Alignment:
Q  567 agatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    |||| |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  9703938 agatatttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 630
Target Start/End: Original strand, 17368366 - 17368428
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 630  Q
    ||||||||||| ||||| |||||||||||| | |  ||||||||||||||||| | |||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttcct 17368428  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 619
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  569 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 619  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 617
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 620
Target Start/End: Complemental strand, 1470970 - 1470922
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    ||||| ||||||| || ||||||||||| ||||||||| ||||||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 4183190 - 4183150
Alignment:
Q  427 attgtttctcttgatttggagaaggagtcttatcgagagct 467  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagct 4183150  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 561 - 617
Target Start/End: Complemental strand, 24629269 - 24629213
Alignment:
Q  561 ttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 617  Q
    ||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||    
T  24629269 ttttacagatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 609
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttgg 609  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 572 - 636
Target Start/End: Complemental strand, 51381502 - 51381438
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 636  Q
    ||||| ||||||| || ||||||||| | || |||||||||||||||||| || ||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 632
Target Start/End: Original strand, 51858606 - 51858670
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctca 632  Q
    ||||||||| | |||||||| |||||||||   || |||||||||||||||||  ||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctca 51858670  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 572 - 643
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  572 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 643  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 618
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  568 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 618  Q
    |||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 618
Target Start/End: Complemental strand, 40440 - 40382
Alignment:
Q  560 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 618  Q
    ||||||| |||||||||||||||||||| |||| |||||| || ||||||| |||||||    
T  40440 cttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattg 40382  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 574 - 620
Target Start/End: Original strand, 55419788 - 55419834
Alignment:
Q  574 tggcttatgaaggagtatggaaataatgattcttggactaaattgtt 620  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 11032902 - 11032960
Alignment:
Q  560 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 618  Q
    ||||||| ||||||||||| |||||||| || |||||||| || ||||||| |||||||    
T  11032902 cttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattg 11032960  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 571 - 621
Target Start/End: Complemental strand, 22672175 - 22672125
Alignment:
Q  571 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 621  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttc 22672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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