View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8212_low_10 (Length: 259)

Name: NF8212_low_10
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8212_low_10
NF8212_low_10
[»] chr1 (3 HSPs)
chr1 (168-240)||(52800412-52800484)
chr1 (98-168)||(52800548-52800618)
chr1 (4-47)||(52800651-52800694)
[»] scaffold0042 (2 HSPs)
scaffold0042 (98-168)||(32070-32140)
scaffold0042 (172-239)||(31917-31984)


Alignment Details
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 52800484 - 52800412
Alignment:
Q  168 gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttac 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52800484 gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttac 52800412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 52800618 - 52800548
Alignment:
Q  98 ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 168  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52800618 ggagaatcaggactccagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 52800548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 52800694 - 52800651
Alignment:
Q  4 tgtttcgtcgcgttaagagagaacgcctcaacgtcgccgccgcc 47  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  52800694 tgtttcgtcgcgttaagagagaacgcctcaacgccgccgccgcc 52800651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 32140 - 32070
Alignment:
Q  98 ggagcatcaggactccagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 168  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32140 ggagcatcaggactccaacattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg 32070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 31984 - 31917
Alignment:
Q  172 aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagtta 239  Q
    ||||||||||||| ||||||  || ||| || ||||||||||||||||||||||| ||||| ||||||    
T  31984 aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagtta 31917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University