View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_low_13 (Length: 240)
Name: NF8212_low_13
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 42658692 - 42658796
Alignment:
| Q |
121 |
ataatgtaccaacaaaagaagcttataaactactcaaacatgcaagaaacaatccagcatgtacaccaaactcaagacaccttcaaacatcaaaatgtaa |
220 |
Q |
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| T |
42658692 |
ataatgtaccaacaaaagaagcttataaactactcaaacatgcaagaaacaatccagcatgtacaccaaactcaagacaccttcaaacatcaaaatgtaa |
42658791 |
T |
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| Q |
221 |
acttg |
225 |
Q |
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||||| |
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| T |
42658792 |
acttg |
42658796 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42658572 - 42658628
Alignment:
| Q |
1 |
ttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658572 |
ttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
42658628 |
T |
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