View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8212_low_14 (Length: 240)
Name: NF8212_low_14
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 39088090 - 39087870
Alignment:
| Q |
16 |
cagtcacatcagaaagcagcaaaactgtaatacaagataaggctgatgacgtgatcatcaaatcaactgggaatgttgacaataggaaaaatgaagcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088090 |
cagtcacatcagaaagcagcaaaactgtaatacaagataaggctgatgacgtgatcatcaaatcaactgggaatgttgacaataggaaaaatgaagcaga |
39087991 |
T |
|
| Q |
116 |
acataaagctgatgatatggtcattgaagaagttacggcagatattaggaaaaatgaagcagaggagaaggctgctgacatgatcattgcgacaactggg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39087990 |
acataaagctgatgatatggtcattgaagaagttacggcagatattaggaaaaatgaagcagaggagaaggctgctgacatgatcattgcgacaactggg |
39087891 |
T |
|
| Q |
216 |
actgcaaatattggagcagct |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39087890 |
actgcaaatattggagcagct |
39087870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University