View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_low_3 (Length: 394)
Name: NF8212_low_3
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 373
Target Start/End: Complemental strand, 7161353 - 7161000
Alignment:
| Q |
20 |
ctctaaacaatcaaagttgggatcacttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccat |
119 |
Q |
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| T |
7161353 |
ctctaaacgatcaaagttgggatcgcttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccat |
7161254 |
T |
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| Q |
120 |
tcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaag |
219 |
Q |
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| T |
7161253 |
tcagaaatttactaaattgccctctttgggctatacagaacgagaggggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaag |
7161154 |
T |
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| Q |
220 |
gttgttgttgttgattggtatagtgatgacggttctcattatgggcttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaagga |
319 |
Q |
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| T |
7161153 |
gttgttgttgttgattggtatagtgatgacggttctcattatgggcttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaagga |
7161054 |
T |
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| Q |
320 |
ttcagaattttccttataccccttttggtgcggatggttcaggaacagttgtct |
373 |
Q |
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| T |
7161053 |
ttcagaattttccttataccccttttggtgcggatggttcaggaacagttgtct |
7161000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 11237232 - 11237370
Alignment:
| Q |
98 |
ctcttgtgtggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatga |
197 |
Q |
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| T |
11237232 |
ctcttttgtggaacccttccattaagaaatttacgaaatcaccatctttggataatccaaaacgagatgggagttacacaatttatggttttggctatga |
11237331 |
T |
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| Q |
198 |
tcatgtaagtgacacttacaaggttgttgttgttgattg |
236 |
Q |
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| T |
11237332 |
tcatgtcaatgacatttacaaggttgttgctgtttattg |
11237370 |
T |
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