View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8212_low_4 (Length: 385)
Name: NF8212_low_4
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Complemental strand, 4355927 - 4355558
Alignment:
| Q |
3 |
tacctcaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattata |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4355927 |
taccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgata |
4355828 |
T |
|
| Q |
103 |
agacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4355827 |
agacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacattaatggctttgttgtgaaacacgttcatgtcg |
4355728 |
T |
|
| Q |
203 |
aagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaattttttgatg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4355727 |
aagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaatttattgatg |
4355628 |
T |
|
| Q |
303 |
accattccattgggttttcaaaaagaaacactttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
4355627 |
accattccattgggttttcaaaaagaaacaccttgtaatcatctgaagagaaatctaacatgatgtttat |
4355558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 4674985 - 4675354
Alignment:
| Q |
3 |
tacctcaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattata |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
4674985 |
taccccaattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagatgata |
4675084 |
T |
|
| Q |
103 |
agacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
4675085 |
agacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacataaatggctttgttgtgaaacaagttcatgtcg |
4675184 |
T |
|
| Q |
203 |
aagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaattttttgatg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4675185 |
aagttcatgtttcttccaccagcaaggaaaccattatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaatttattgatg |
4675284 |
T |
|
| Q |
303 |
accattccattgggttttcaaaaagaaacactttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
4675285 |
accattccattgggttttcaaaaagaaacaccttgtaatcatctgaagagaaatctaacatgatgtttat |
4675354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 372
Target Start/End: Complemental strand, 38249478 - 38249145
Alignment:
| Q |
36 |
tatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctagg |
135 |
Q |
| |
|
|||| |||||| | || ||||| ||||||||| | ||||| |||||| |||| ||||| | ||||||||||||||| |||||||| ||||| || |||| |
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|
| T |
38249478 |
tatgacaaccttttatagcttcccttggcaacttaagcatagttgagattccgttctctatattataagacattatatatggcttataaaatggactaga |
38249379 |
T |
|
| Q |
136 |
ttttgcaaaataatgagaacaatctgagataacatgaatggctttgttgtgaaacacgttcatgtcgaagttcatgtttcttccaccagcaaggaaa-cc |
234 |
Q |
| |
|
||||||||| ||| || | ||||||||||| ||||| | || ||||||||||| |||||| || |||||||||| |||||| || | ||| || |
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|
| T |
38249378 |
ttttgcaaagtaaggatcgctatctgagataaaatgaaggcctcctttgtgaaacacaggcatgtcaaatttcatgtttcgaccacca-catgaaaaacc |
38249280 |
T |
|
| Q |
235 |
attatccattgttttccacacaccttccttttcatgataaacacgacatgtatagcaattttttgatgaccattccattgggttttcaaaaagaaacact |
334 |
Q |
| |
|
| | ||||||||| |||||||||||||||| ||| ||||||| ||||||||| ||| || | ||||||||| ||| ||||||||||||||||| |
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|
| T |
38249279 |
actttccattgttgtccacacaccttccttgctatggtaaacactacatgtataacaagtt---ggtgaccattcacttgtgttttcaaaaagaaacaac |
38249183 |
T |
|
| Q |
335 |
ttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
||||| | |||| ||||||||||||||| || |||||| |
|
|
| T |
38249182 |
ttgtagtcatctaaagagcaatctaacacgaggtttat |
38249145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 38254547 - 38254458
Alignment:
| Q |
84 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| |||| | |||||| ||| || ||||||||||||| ||||| |
|
|
| T |
38254547 |
ttccattctctagattataagacattatatatggcttataaaaaggactagatcttgcaatgtaagaagcgcaatctgagataaaatgaa |
38254458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 20657143 - 20656984
Alignment:
| Q |
14 |
aatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgt |
113 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| | | ||||| ||||||||||| ||||| |||||| |||||||||| ||||||||||||||||| | |
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|
| T |
20657143 |
aatatgcccatgttacacataatatgacaaccttttacagcttcccttggcaacctaagcatagttgagattccattctctagattataagacattatat |
20657044 |
T |
|
| Q |
114 |
atggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
173 |
Q |
| |
|
||||||| |||||||| |||| ||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
20657043 |
atggcttataaaaaggcctagattttgcaaagtaagaagtgcaatctgagataaaatgaa |
20656984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 12036828 - 12036669
Alignment:
| Q |
14 |
aatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgt |
113 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| | | ||||| |||| |||| | ||||| |||||| |||||||||| ||||||||||||||| | | |
|
|
| T |
12036828 |
aatatgcccatgttacacataatatgacaaccttttacagcttcccttgacaacttaagcatggttgagattccattctctagattataagacattgtat |
12036729 |
T |
|
| Q |
114 |
atggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
173 |
Q |
| |
|
||||||| |||||||| |||| ||||||||| ||| | |||||||||||||| ||||| |
|
|
| T |
12036728 |
atggcttataaaaaggactagattttgcaaagtaagaatcacaatctgagataaaatgaa |
12036669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 12035936 - 12036055
Alignment:
| Q |
54 |
cttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgaga |
153 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| || ||||||| ||||||||||||||||| ||| |||| |||||||| |||| ||||||||| ||| | |
|
|
| T |
12035936 |
cttcccttggcaacctaagcatagttgagatttcattctctagattataagacattatatatagcttataaaaaggactagattttgcaaagtaagaggc |
12036035 |
T |
|
| Q |
154 |
acaatctgagataacatgaa |
173 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
12036036 |
gcaatctgagataaaatgaa |
12036055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 20655968 - 20656105
Alignment:
| Q |
8 |
caattaaatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttc-cattctcgagattataagac |
106 |
Q |
| |
|
||||| ||||||||||||||| ||| |||| |||||| | | |||| ||||||||| | ||||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
20655968 |
caattgaatatgcccatgttacacataatatgacaaccttttacaacttcccttggcaacttaagcatagttgagattctcattctctagattataagac |
20656067 |
T |
|
| Q |
107 |
attatgtatggcttgtaaaaagggctaggttttgcaaa |
144 |
Q |
| |
|
|||| |||||||| |||||||| |||| ||||||||| |
|
|
| T |
20656068 |
attacatatggcttataaaaaggactagattttgcaaa |
20656105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 12036517 - 12036473
Alignment:
| Q |
328 |
aaacactttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
12036517 |
aaacaccttgtaatcatctaaagagcaatctaacatgaggtttat |
12036473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 20656262 - 20656318
Alignment:
| Q |
316 |
gttttcaaaaagaaacactttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
|||||| ||||||||||| ||||| | |||| || ||||||||||||||| |||||| |
|
|
| T |
20656262 |
gttttccaaaagaaacaccttgtagtcatctaaatagcaatctaacatgaggtttat |
20656318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 22177564 - 22177405
Alignment:
| Q |
14 |
aatatgcccatgttagtcatggtatggcaacctctaatggcttctcttggcaacctcagcattgttgagtttccattctcgagattataagacattatgt |
113 |
Q |
| |
|
|||||||||||||| ||| |||| |||||| | || ||||| ||||||||| | | ||| ||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
22177564 |
aatatgcccatgttgcacataatatgacaaccttttatagcttcccttggcaacttaaacatggttgaaattccattctctagattataagacattatat |
22177465 |
T |
|
| Q |
114 |
atggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
173 |
Q |
| |
|
||||||| |||||||| || | ||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
22177464 |
atggcttataaaaaggactggattttgcaaagtaagaagcgcaatctgagataaaatgaa |
22177405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 22169219 - 22169130
Alignment:
| Q |
84 |
ttccattctcgagattataagacattatgtatggcttgtaaaaagggctaggttttgcaaaataatgagaacaatctgagataacatgaa |
173 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |||||||| || | ||||||| | ||| || ||||||||||||| ||||| |
|
|
| T |
22169219 |
ttccattctctagattataagacattatatatggcttataaaaaggactggattttgcatagtaagaagcgcaatctgagataaaatgaa |
22169130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 22177265 - 22177209
Alignment:
| Q |
316 |
gttttcaaaaagaaacactttgtaatgatctgaagagcaatctaacatgatgtttat |
372 |
Q |
| |
|
|||||| ||||||||||| ||| | | |||| |||||||||||||||||| |||||| |
|
|
| T |
22177265 |
gttttccaaaagaaacacgttgaagtcatctaaagagcaatctaacatgaggtttat |
22177209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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