View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_low_8 (Length: 290)
Name: NF8212_low_8
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 44460069 - 44459796
Alignment:
| Q |
1 |
gcattaagaacctcttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacac |
100 |
Q |
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| T |
44460069 |
gcattaagaacctcttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacac |
44459970 |
T |
|
| Q |
101 |
tgtacccattccaccattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459969 |
tgtacccattccaccattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaa |
44459870 |
T |
|
| Q |
201 |
agatgccattagccaaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcatcctatgatct |
274 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44459869 |
agatgccattagccaaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcaccctatgatct |
44459796 |
T |
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