View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8212_low_9 (Length: 281)
Name: NF8212_low_9
Description: NF8212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8212_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 35517584 - 35517328
Alignment:
| Q |
15 |
gcccgtttacccgtcggacttactccacaccacagccaaaagcttctcgatcaaacctccgctgccagactcgtccctcaacaacaactcgacttttctg |
114 |
Q |
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| T |
35517584 |
gcccgtttacccgtcggacttactccacaccacagccaaaagcttctcgatcaaacctccgctgccagactcgtccctcaacaacaactcgacttttctg |
35517485 |
T |
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| Q |
115 |
gaatacatgacttgactggcattctctccgttgccgtttctggtaaattgttgaccgttccagagctttgcaccgttcgaagaacactttctgctgctag |
214 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35517484 |
gaatacatgacttgactgacattctctccgtttccgtttctggtaaattgttgaccgttccagagctttgcaccgttcgaagaacactttcttctgctag |
35517385 |
T |
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| Q |
215 |
agaattgtttgatactttgagacacttggcttctgtatctaatcattcacacaggtt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35517384 |
agaattgtttgatactttgagacacttggcttctgtatctaatcattcacacaggtt |
35517328 |
T |
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