View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8213_low_1 (Length: 480)
Name: NF8213_low_1
Description: NF8213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8213_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 657781 - 658260
Alignment:
| Q |
1 |
ttgaaaatgtggcttgcgtaatggggaaatgcatgaatggttatatttccgtttttcagtgtctagtgtgaaaataatgtgacatgttaggcaaaagtgt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
657781 |
ttgaaaatgtggcttgcgtaatggtgaaatgcatgaatggttatattttcgtttttcagtgtctagtgtgaaaataatgtgacatgttagtcaaaagtgt |
657880 |
T |
|
| Q |
101 |
cataagttatgtcttccataattgtaaagcttttcaataatgtttatagtgacatgtgtgtggatagttgtgtctttatctttagtgtatctccttgact |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
657881 |
cataagt-atgtcttccataattgtaaagcttttcaataatgtttatagtgacatgtgtgtggatagttgtgtctttatctttagtgtatctcattggct |
657979 |
T |
|
| Q |
201 |
ataaaaggagaagagttgtaacatatccctcacaacgaaaatcaaataaaatcctagtgtgttttatgtaaaacatgttcttctaaattc-nnnnnnnca |
299 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
657980 |
ataaaaggagaagagttgtaacatatccctcataacgaaaatcaaataaaatcgtagtgtgttttatgtaaaacatgttcttctaaattcttttttttca |
658079 |
T |
|
| Q |
300 |
tttagaaagctcttattattatgttcatatcataaattccaccctagagatgaagtgagcatttaaaacctcaggaaagaggaaccttgccaaataacat |
399 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
658080 |
tttagaaagctctaattattatgttcatatcataaattccaccctagagatgaagtgagcatttaaaacctcaggaaagaggaaccttgccaaataacat |
658179 |
T |
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| Q |
400 |
tagtttgaagaaaattcgtagtcagccataccactaatatcacaaaatcaatatctacaactgcttttgtcaacaacattt |
480 |
Q |
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| T |
658180 |
tagtttgaggaaaatttgtagtcacttataccactaatatcacaaaatcaatatctacaactgcttttgtcaacagcattt |
658260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 71 - 289
Target Start/End: Complemental strand, 19965702 - 19965485
Alignment:
| Q |
71 |
aaaataatgtgacatgttaggcaaaagtgtcataagttatgtcttccataattgtaaagcttttcaataatgtttatagtgacatgtgtgtggatagttg |
170 |
Q |
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||||||||||||||| |||| |||||||||||||| |||||||||||| || ||| || | ||||| ||||| |||| |||| | ||| |||||| |
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| T |
19965702 |
aaaataatgtgacattttagtcaaaagtgtcataaaa-atgtcttccatagttataatgcatgccaatagtgttttcagtggcatgcgagtgaatagttc |
19965604 |
T |
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| Q |
171 |
tgtctttatctttagtgtatctccttgactataaaaggagaagagttgtaacatatccctcacaacgaaaatcaaataaaatcctagtgtgttttatgta |
270 |
Q |
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| T |
19965603 |
tatctttgtctttagtgtacctcattggctataaaaggagaagaattgtaacatctttctcacaacttgaatcaaataaaatcctagtgtgtttcaagaa |
19965504 |
T |
|
| Q |
271 |
aaacatgttcttctaaatt |
289 |
Q |
| |
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||||||||||||||||||| |
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| T |
19965503 |
aaacatgttcttctaaatt |
19965485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 12366122 - 12366254
Alignment:
| Q |
153 |
catgtgtgtggatagttgtgtctttatctttagtgtatctccttgactataaaaggagaagagttgtaacatatccctcacaacgaaaatcaaataaaat |
252 |
Q |
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|||||| ||| |||||| | | ||| || ||| |||||||||||| |||||||||||||||||||||||||||| | |||||| ||| |||| |||| |
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| T |
12366122 |
catgtgagtgaatagttttatttttgtccttaatgtatctccttggctataaaaggagaagagttgtaacatatttcacacaacttgaatgaaat-aaat |
12366220 |
T |
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| Q |
253 |
cctagtgtgttttatgtaaaacatgttcttctaa |
286 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
12366221 |
cctagtgtgttttatgaaaaacatgttcttctaa |
12366254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 28942094 - 28942261
Alignment:
| Q |
59 |
gtgtctagtgtgaaaataatgtgacatgttaggcaaaa-gtgtcataagttatgtcttccataattgtaaagcttttcaataatg--tttatagtgacat |
155 |
Q |
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||||| |||||| ||||||||||||||| ||| ||||| ||||||||||| |||| |||||||||| |||| | | | | || ||| |||| |||| |
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| T |
28942094 |
gtgtcaagtgtgcaaataatgtgacatgatagtcaaaaagtgtcataagt-atgttttccataattataaaatatattagtcgtgcgtttttagtaacat |
28942192 |
T |
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| Q |
156 |
gtgtgtggatagttgtgtctttatctttagtgtatctccttgactataaaaggagaagagttgtaacata |
225 |
Q |
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|| | || |||||| ||||||| |||||| ||||||||||| ||||||||| ||||| |||||||||||| |
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| T |
28942193 |
gtttatgaatagttatgtctttgtctttaatgtatctccttaactataaaa-gagaaaagttgtaacata |
28942261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 12470613 - 12470494
Alignment:
| Q |
109 |
atgtcttccataattgtaaagcttttcaataatgttt-atagtgacatgtgtgtggatagttgtgtctttatcttt-agtgtatctccttgactataaaa |
206 |
Q |
| |
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||||||| |||||||||||||| | ||||| |||||| ||| |||||||||| || ||| || ||| || |||||| |||||| |||||| |||||||| |
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| T |
12470613 |
atgtcttgcataattgtaaagcatgtcaatgatgttttataatgacatgtgtatgaataattttgttttcatcttttagtgtacctccttagctataaaa |
12470514 |
T |
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| Q |
207 |
ggagaagagttgtaacatat |
226 |
Q |
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| T |
12470513 |
gaagaagtgttgtaacatat |
12470494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 44669351 - 44669396
Alignment:
| Q |
181 |
tttagtgtatctccttgactataaaaggagaagagttgtaacatat |
226 |
Q |
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||||||||| ||| |||||||||||||||||| |||||||||||| |
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| T |
44669351 |
tttagtgtacctcattgactataaaaggagaattgttgtaacatat |
44669396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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