View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_high_11 (Length: 381)
Name: NF8214_high_11
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 1628986 - 1628607
Alignment:
| Q |
1 |
cgaggtgcatgaggccatgcatcacctttggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacgcttgaggtgcacac |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
1628986 |
cgaggtgcatgaggccatgcatcgcctgtggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacacttgaggtggacac |
1628887 |
T |
|
| Q |
101 |
caaaccaatgagtagttgctaacgccacagtagtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1628886 |
caaaccaatgagtagttgctaacgccacagtagtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgc |
1628787 |
T |
|
| Q |
201 |
agcttatgtatttctcttccgtcctttgaattatgttgtttatgacagtt--------atcatgtgtaactaaactttcataaattaggattgaatgatg |
292 |
Q |
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| T |
1628786 |
aacttatgtatttcgcttccgtcctttgaattatgttgtttatgacagttatcaagttatcatgtgtaactaaactttcataaattaggattgaatgatg |
1628687 |
T |
|
| Q |
293 |
aacatttttgtaatggttggaaccacatgacctatgagtccttttcttagcgcaattcatattatatttatttgttttat |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1628686 |
aacatttttgtaatggttggaaccacatgacctatgagtccttttcttagcgcaattcatattatatttatttgttttat |
1628607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 10821806 - 10821868
Alignment:
| Q |
134 |
tatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaaca |
196 |
Q |
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| T |
10821806 |
tatgtccatgcgcgagactcgtgcatgtttttgaaggtttggaaacaagtttgaggatcaaca |
10821868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 10821654 - 10821778
Alignment:
| Q |
1 |
cgaggtgcatgaggccatgcatcacctttggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacgcttgaggtgcacac |
100 |
Q |
| |
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||||| |||||||||||||| || | || |||||||||||||||||||| |||| ||||| |||| |||||||||||||||| | ||||||||| | |
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| T |
10821654 |
cgaggcgcatgaggccatgcgtcgcgcgtgacagttgctcatctccttgatatctcatcagcacgcgctaggcgcagaaggaaacacatgaggtgcatag |
10821753 |
T |
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| Q |
101 |
caaaccaatgagtagttgctaacgc |
125 |
Q |
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| T |
10821754 |
caaaccaaggatgagttgctaacgc |
10821778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 366
Target Start/End: Original strand, 29413160 - 29413369
Alignment:
| Q |
163 |
tttgaaggtttggaaacaagtttgaggatcaacaccgcagcttatgtatttctcttccgtcctttgaattatgttgtttatgacagttat------catg |
256 |
Q |
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|||||||| ||| |||||||||| | |||| |||| | ||||||||||||||||| |||| ||||||||||||||| ||| | || || | |
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| T |
29413160 |
tttgaaggcttgaaaacaagtttaaagatctacacatgtgtttatgtatttctcttccactctttaaattatgttgtttattacactgattggaatcaag |
29413259 |
T |
|
| Q |
257 |
tgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccacatgacctatgagtccttttcttagcgcaattcatatta |
356 |
Q |
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|||||||||||||||||| ||| ||||||||||| |||| || |||||||||||||| ||| || || |||| ||||||||| | | |||||| |||| |
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| T |
29413260 |
tgtaactaaactttcatattttatgattgaatgataaacaattatgtaatggttggaatcacgtggccgatgaatccttttctcaacacaattctgatta |
29413359 |
T |
|
| Q |
357 |
tatttatttg |
366 |
Q |
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| |||||||| |
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| T |
29413360 |
tgtttatttg |
29413369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 37545197 - 37545266
Alignment:
| Q |
249 |
ttatcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccac |
318 |
Q |
| |
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|||||||||||| ||||||||| ||| |||| ||||||||||||||| ||| ||||||||||| |||||| |
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| T |
37545197 |
ttatcatgtgtatctaaactttaatagattatgattgaatgatgaacctttatgtaatggttgaaaccac |
37545266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 7674242 - 7674195
Alignment:
| Q |
248 |
gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac |
295 |
Q |
| |
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||||||||||||||||||||| || || |||||||||||||||||||| |
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| T |
7674242 |
gttatcatgtgtaactaaactctcgtagattaggattgaatgatgaac |
7674195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 8320002 - 8320071
Alignment:
| Q |
225 |
tttgaattatgttgtttatgacagttatcatgtgtaactaaactttcataaattaggattgaatgatgaa |
294 |
Q |
| |
|
|||||| | |||||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||| |
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| T |
8320002 |
tttgaactttgttgtttattactagtatcacgtgtaactaaactctcataaattatgattgaatgatgaa |
8320071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 36296257 - 36296210
Alignment:
| Q |
248 |
gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac |
295 |
Q |
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||||| ||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
36296257 |
gttattatgtgtaactaaactctcatagattaggattgaatcatgaac |
36296210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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