View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_high_13 (Length: 366)
Name: NF8214_high_13
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 7495044 - 7494701
Alignment:
| Q |
7 |
aacaacaatgaattatagaatcctgtataaaaatgaaacattttaacaaagagtggattttccaatgactaattagcacaataatgtttaccatccatgg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7495044 |
aacaacaatgaattatagaatcctgtataaaaatgaaacattttaactaagagtggattttccaatgactaattagcacaagaatgtttaccatccatga |
7494945 |
T |
|
| Q |
107 |
ccggtacctccatttccgacgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtga |
206 |
Q |
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|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
7494944 |
ccggtacctccatttccggcaacctttttctggcggctttgttcagtcccttgcaacttagatccattcgtttttcttgtagaactaaccgcggaggtga |
7494845 |
T |
|
| Q |
207 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494844 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccctggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
7494745 |
T |
|
| Q |
307 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7494744 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
7494701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 37373653 - 37373310
Alignment:
| Q |
7 |
aacaacaatgaattatagaatcctgtataaaaatgaaacattttaacaaagagtggattttccaatgactaattagcacaataatgtttaccatccatgg |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37373653 |
aacaataatgaattatagaatcctgtataaaaatgaaacattttaactaagagtggattttccaatgactaattagcacaagaatgtttaccatccatga |
37373554 |
T |
|
| Q |
107 |
ccggtacctccatttccgacgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtga |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
37373553 |
ccggtacctccatttccggcgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtga |
37373454 |
T |
|
| Q |
207 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
37373453 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgtcggtgacacatttgaaattcaccattttctgacccactttaatct |
37373354 |
T |
|
| Q |
307 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37373353 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
37373310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 26487632 - 26487289
Alignment:
| Q |
7 |
aacaacaatgaattatagaatcctgtataaaaatgaaacattttaacaaagagtggattttccaatgactaattagcacaataatgtttaccatccatgg |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
26487632 |
aacaacgatgaattatagaatcctgtataaaaatgaaacattttaactaagagtggatttttcaatgactaatcagcacaagaatgtttaccatccatgg |
26487533 |
T |
|
| Q |
107 |
ccggtacctccatttccgacgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtga |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26487532 |
ccggtacctccatttccagcgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtga |
26487433 |
T |
|
| Q |
207 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26487432 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctctccgaaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
26487333 |
T |
|
| Q |
307 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
350 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26487332 |
tcgctttcagtttttgttttgtaattctaatctatagttttaat |
26487289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 38618478 - 38618814
Alignment:
| Q |
7 |
aacaacaatgaattatagaatcctgtataaaaatgaaacattttaacaaagagtggattttccaatgactaattagcacaataatgtttaccatccatgg |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38618478 |
aacaacaatgaattatagaatcc-------aaatgaaacattttaactaagagtggattttccaatgactaattagcacaagaatgtttaccatccatgg |
38618570 |
T |
|
| Q |
107 |
ccggtacctccatttccgacgacctttttctggcggctttgttcagtcccttgcaacttagatccattcgattttcttgtagagctaaccgcggaggtga |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38618571 |
ccggtacctccatttccggcgacctttttctggtggctttgttcagtcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtga |
38618670 |
T |
|
| Q |
207 |
ccacaggagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618671 |
ccacaggagccttcgttggctgtgattgtcggaaaaattctccccggaatctcgccggcgacacatttggaattcaccattttctgacccactttaatct |
38618770 |
T |
|
| Q |
307 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618771 |
tcactttcagtttttgttttgtaattctaatctatagttttaat |
38618814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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