View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8214_high_20 (Length: 286)
Name: NF8214_high_20
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 5929476 - 5929716
Alignment:
| Q |
21 |
atcccacacaactcaaacctaaaagaatttcaagcataaggatatttcatgataacaggagaggatcacgatctaaaaataacatatacaca----tnnn |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
5929476 |
atcccacacaactcaaacctaaaagaatttcaagcataaggatattccatgataacaggagaggatcacgatctaaaaataacatatatacacatataaa |
5929575 |
T |
|
| Q |
117 |
nnnnntacaaaagcaatgccatgcatggaagaaacacatagaatggtatgtcatgctaagtaagtatgcagcacatgtaattttgttcttaggtacccaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5929576 |
aaaaatacaaaagcaatgccatgcatggaagaaacacatagaatggta--------------agtatgcagcacatgtaattttgttcttaggaacccaa |
5929661 |
T |
|
| Q |
217 |
atccttttggggtgataatatgttagtttgaaaaggtttattatctttctttgtt |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5929662 |
atccttttggggtcataatatgttagtttgaaaaggtttattatctttctttgtt |
5929716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 4702454 - 4702315
Alignment:
| Q |
123 |
acaaaagcaatgccatgcatggaagaaacacatagaatggtatgtcatgctaagtaagtatgcagcacatgtaattttgttcttaggtacccaaatcctt |
222 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4702454 |
acaaaagcaatgc----catggaagaaacac--agaatgatattgcatgctaagtaagtatgcagcacatgcaattttgttcttaggtacccaaatcctt |
4702361 |
T |
|
| Q |
223 |
ttggggtgataatatgttagtttgaaaaggtttattatctttcttt |
268 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4702360 |
ttggggtcataatatgttagtttgaaatggtttattatctatcttt |
4702315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 4702694 - 4702654
Alignment:
| Q |
21 |
atcccacacaactcaaacctaaaagaatttcaagcataagg |
61 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4702694 |
atcccaaacaactcaaacctataagaatttcaaacataagg |
4702654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University