View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8214_high_21 (Length: 284)

Name: NF8214_high_21
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8214_high_21
NF8214_high_21
[»] chr1 (8 HSPs)
chr1 (1-71)||(38618230-38618300)
chr1 (22-71)||(50354995-50355044)
chr1 (23-72)||(24976719-24976768)
chr1 (23-72)||(29334947-29334996)
chr1 (22-71)||(51610220-51610269)
chr1 (23-71)||(51976264-51976312)
chr1 (1-41)||(11031461-11031501)
chr1 (1-41)||(11032197-11032237)
[»] chr2 (10 HSPs)
chr2 (1-72)||(26487823-26487894)
chr2 (23-71)||(6851912-6851960)
chr2 (23-71)||(6852809-6852857)
chr2 (24-71)||(26893482-26893529)
chr2 (24-71)||(26898921-26898968)
chr2 (5-71)||(8536868-8536934)
chr2 (1-41)||(37545706-37545746)
chr2 (5-71)||(8536132-8536203)
chr2 (1-46)||(34617678-34617723)
chr2 (1-41)||(37546542-37546582)
[»] chr8 (7 HSPs)
chr8 (8-71)||(33802358-33802421)
chr8 (5-71)||(38686303-38686369)
chr8 (8-71)||(33801499-33801562)
chr8 (5-66)||(32551090-32551151)
chr8 (5-66)||(38687037-38687098)
chr8 (23-71)||(42638148-42638196)
chr8 (5-69)||(31694164-31694228)
[»] chr5 (6 HSPs)
chr5 (1-72)||(7495235-7495306)
chr5 (23-71)||(43589162-43589210)
chr5 (23-69)||(18153434-18153480)
chr5 (23-71)||(42993200-42993248)
chr5 (23-71)||(32402190-32402238)
chr5 (30-71)||(43054383-43054424)
[»] chr4 (13 HSPs)
chr4 (5-71)||(53664212-53664278)
chr4 (5-67)||(50710399-50710461)
chr4 (23-71)||(20681722-20681770)
chr4 (23-71)||(23574617-23574665)
chr4 (8-71)||(53665071-53665134)
chr4 (23-72)||(55511901-55511950)
chr4 (1-41)||(30808651-30808691)
chr4 (1-41)||(45331431-45331471)
chr4 (5-46)||(6246809-6246850)
chr4 (34-71)||(23573638-23573675)
chr4 (22-71)||(31911539-31911588)
chr4 (1-41)||(6680320-6680360)
chr4 (1-41)||(45330595-45330635)
[»] chr7 (10 HSPs)
chr7 (21-71)||(34852557-34852607)
chr7 (31-71)||(42344222-42344262)
chr7 (23-71)||(46814247-46814295)
chr7 (22-71)||(34853333-34853382)
chr7 (23-71)||(5004188-5004236)
chr7 (1-41)||(27599241-27599281)
chr7 (23-71)||(30916496-30916544)
chr7 (30-71)||(42343296-42343337)
chr7 (1-41)||(27600073-27600113)
chr7 (5-41)||(12732277-12732313)
[»] chr3 (7 HSPs)
chr3 (23-71)||(35432221-35432269)
chr3 (23-71)||(44406197-44406245)
chr3 (23-71)||(7359842-7359890)
chr3 (30-68)||(35431335-35431373)
chr3 (25-71)||(47480507-47480553)
chr3 (1-37)||(15450259-15450295)
chr3 (1-41)||(55193618-55193658)
[»] chr6 (7 HSPs)
chr6 (22-71)||(19063660-19063709)
chr6 (23-71)||(20687464-20687512)
chr6 (30-71)||(20689063-20689104)
chr6 (31-69)||(10606336-10606374)
chr6 (30-72)||(34716164-34716206)
chr6 (30-71)||(10607351-10607392)
chr6 (30-71)||(29382847-29382888)
[»] scaffold0189 (1 HSPs)
scaffold0189 (5-41)||(12841-12877)
[»] scaffold0071 (1 HSPs)
scaffold0071 (1-37)||(11896-11932)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 38618300 - 38618230
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38618300 cttaatctaatggtcaaacttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 38618230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 50354995 - 50355044
Alignment:
Q  22 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50354995 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 50355044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 24976719 - 24976768
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24976719 actttcccatggtggaaaagaattcctcctacccaccctaaatgccacca 24976768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 29334947 - 29334996
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29334947 actttcccatggtgggaaataattcctcctacccaccctaaatgacacca 29334996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 51610220 - 51610269
Alignment:
Q  22 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 51976312 - 51976264
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  51976312 acttttccatggtggaaaagaattcctcctacccaccctaaatgccacc 51976264  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11031501 - 11031461
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  11031501 cttaatctaatggtcaaatttaactttcccatggtgggaaa 11031461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11032197 - 11032237
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  11032197 cttaatctaatggtcaaattcaactttcccatggtgggaaa 11032237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26487823 - 26487894
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    |||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  26487823 cttaatctaatggtcaagcttaactttctcatggtaggaaagaattcctcctacccaccctaaatgccacca 26487894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6851960 - 6851912
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6851960 actttcccatgatgggaaagaattcctcctacccaccctaaatgccacc 6851912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6852809 - 6852857
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6852809 actttcctatggtgggaaagaattcctcctacccaccctaaatgccacc 6852857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26893529 - 26893482
Alignment:
Q  24 ctttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26893529 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 26893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 26898968 - 26898921
Alignment:
Q  24 ctttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26898968 ctttcccatggtgggaaagaattccttctacccaccctaaatgccacc 26898921  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8536868 - 8536934
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||  || ||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  8536868 atctaatggtcaacatttacttttccatggtaggaaagaattccttctacccaccctaaatgccacc 8536934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37545746 - 37545706
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  37545746 cttaatctaatggtcaaatttaactttcccatggtgggaaa 37545706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 8536203 - 8536132
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcc-----tcctacccaccctaaatgccacc 71  Q
    ||||||| |||||| || ||||||||||||||| ||||||||||     | |||||||||||||||||||||    
T  8536203 atctaatcgtcaatatttactttcccatggtggaaaagaattccttctattctacccaccctaaatgccacc 8536132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34617723 - 34617678
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaagaatt 46  Q
    |||||||||||||||||   ||||||||||||||||||||| ||||    
T  34617723 cttaatctaatggtcaaaaataactttcccatggtgggaaacaatt 34617678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37546542 - 37546582
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  37546542 cttaatctagtggtcaaatttaactttcccatgatgggaaa 37546582  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 33802358 - 33802421
Alignment:
Q  8 taatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33802358 taatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaatgccacc 33802421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 38686369 - 38686303
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  38686369 atctaatggtcaatatttactttcccatggtggaaaagaattccttctacccaccctaaatgccacc 38686303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 33801562 - 33801499
Alignment:
Q  8 taatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33801562 taatggtcaatatttacttttccatggtgggaaagaattccttctacccaccctaaatgccacc 33801499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 32551090 - 32551151
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 66  Q
    |||||||||||||| || ||||||| ||| ||||||||||||||| ||||||||||||||||    
T  32551090 atctaatggtcaatatttactttcctatgatgggaaagaattccttctacccaccctaaatg 32551151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 38687037 - 38687098
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 66  Q
    |||||||| ||||| || |||||||||| |||||||||||||||| ||||||||||||||||    
T  38687037 atctaatgatcaatatttactttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 42638196 - 42638148
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||    
T  42638196 actttctcatggtggaaaagaattcctcctacccaccctaaatgccacc 42638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 31694228 - 31694164
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgcca 69  Q
    ||||||| || || ||||||||||| |||||||||||   |||| ||||||||||||||||||||    
T  31694228 atctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgcca 31694164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7495235 - 7495306
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    |||||||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  7495235 cttaatctaatggtcaagcttaactttctcatggtgggaaagaattccccctacccaccctaaatgtcacca 7495306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 43589162 - 43589210
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43589162 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 43589210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 18153434 - 18153480
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgcca 69  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  18153434 actttcccatggtggaaaagaattcctcctacccaccctaaatgcca 18153480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 42993200 - 42993248
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||||||||| ||||||||| |||||||||||||||||||||    
T  42993200 acttttccatggtgggatagaattccttctacccaccctaaatgccacc 42993248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 32402238 - 32402190
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||||||  |||||||||||||| ||||||| ||||    
T  32402238 actttcccatggtgggaaagtcttcctcctacccactctaaatggcacc 32402190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 43054383 - 43054424
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||  ||||||||||||||| |||||||||||    
T  43054383 catggtgggaaagtcttcctcctacccaccttaaatgccacc 43054424  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 53664278 - 53664212
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  53664278 atctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaataccacc 53664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 50710399 - 50710461
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgc 67  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||    
T  50710399 atctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccttaaatgc 50710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20681770 - 20681722
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20681770 actttcccatagtgggaaagaattcctcctacccaccctaaatgccacc 20681722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 23574617 - 23574665
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  23574617 acttttccatggtgggaaagaattcctcctatccaccctaaatgccacc 23574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 53665071 - 53665134
Alignment:
Q  8 taatggtcaattttaactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||| || |||||   ||||||||||||||||||| |||||||||||||||||||||    
T  53665071 taatggtcaatatttacttttttatggtgggaaagaattccttctacccaccctaaatgccacc 53665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 55511950 - 55511901
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  55511950 actttcctatggtgggaaagtattcctcctacctaccctaaatgccacca 55511901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30808691 - 30808651
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  30808691 cttaatctaatggtcaaatttaactttcccatggtgggaaa 30808651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45331431 - 45331471
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  45331431 cttaatctaatggtcaaatttaactttctcatggtgggaaa 45331471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 6246850 - 6246809
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaagaatt 46  Q
    |||||||||||||  |||||||||||||||||||||| ||||    
T  6246850 atctaatggtcaaaattaactttcccatggtgggaaacaatt 6246809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 23573675 - 23573638
Alignment:
Q  34 gtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  23573675 gtgggaaagaattcctccgacccaacctaaatgccacc 23573638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 31911588 - 31911539
Alignment:
Q  22 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||| ||||||||| ||||  ||||||||||||||| |||||||||||    
T  31911588 aacttttccatggtggaaaagtcttcctcctacccaccttaaatgccacc 31911539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6680320 - 6680360
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  6680320 cttaatctaatggtcaatatttactttcccatggtgagaaa 6680360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45330635 - 45330595
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||| ||||||| ||||||||| |||||||||||||    
T  45330635 cttaatctagtggtcaaatttaacttttccatggtgggaaa 45330595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 34852607 - 34852557
Alignment:
Q  21 taactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  34852607 taactttcccatggtggaaaagaattccttctacccaccctaaatgccacc 34852557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 42344222 - 42344262
Alignment:
Q  31 atggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42344222 atggtgggaaagaattcctcctacccaccctaaatgccacc 42344262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 46814247 - 46814295
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  46814247 actttcccatggtgggaaagaattcctcctacccatcctaaataccacc 46814295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 34853333 - 34853382
Alignment:
Q  22 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||| ||||||||||||  |||||||||||||||||||||||||||    
T  34853333 aactttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 5004236 - 5004188
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  5004236 actttcccatggtggaaaagaattcctcctacccatcctaaatgtcacc 5004188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27599281 - 27599241
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  27599281 cttaatctaatggtcaaatttaactttcccatggtgggaaa 27599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 30916496 - 30916544
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  30916496 acttttccatgatgggaaagaattcttcctacccaccctaaatgccacc 30916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 42343337 - 42343296
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  42343337 catggtaggaaagtattcctcctacccaccctaaatgccacc 42343296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27600073 - 27600113
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  27600073 cttaatctagtggtcaaatttaactttcccatggtgggaaa 27600113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 12732313 - 12732277
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaa 41  Q
    |||||||||||||| || |||||||||||||||||||    
T  12732313 atctaatggtcaatatttactttcccatggtgggaaa 12732277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 35432221 - 35432269
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  35432221 acttttccatggtgggaaagaattccttctacccaccctaaatgccacc 35432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 44406245 - 44406197
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  44406245 acttttccatggtgggaaagaattcttcctacccaccctaaatgccacc 44406197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7359842 - 7359890
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  7359842 actttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 35431373 - 35431335
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgcc 68  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35431373 catggtgggaaagtattcctcctacccaccctaaatgcc 35431335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 47480553 - 47480507
Alignment:
Q  25 tttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||| |||||||| ||| |||||||||||||||||||||||| ||||    
T  47480553 tttctcatggtggaaaataattcctcctacccaccctaaatgtcacc 47480507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15450295 - 15450259
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgg 37  Q
    |||||||||||||||||  ||||||||||||||||||    
T  15450295 cttaatctaatggtcaagattaactttcccatggtgg 15450259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 55193658 - 55193618
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgggaaa 41  Q
    ||||||||||||||||  |||||||| ||||||||||||||    
T  55193658 cttaatctaatggtcagatttaacttccccatggtgggaaa 55193618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 19063709 - 19063660
Alignment:
Q  22 aactttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  19063709 aactttcccatggttggaaagtattcctcctacccacccaaaatgccacc 19063660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20687512 - 20687464
Alignment:
Q  23 actttcccatggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  20687512 actttcctatggtgggaaagtattcctcctacctaccctaaatgccacc 20687464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 20689063 - 20689104
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  20689063 catggtaggaaagtattcctcctacccaccctaaatgccacc 20689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 10606374 - 10606336
Alignment:
Q  31 atggtgggaaagaattcctcctacccaccctaaatgcca 69  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  10606374 atggtggaaaagaattcctcctacccaccctacatgcca 10606336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 34716206 - 34716164
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacca 72  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  34716206 catggtgggaaagtattccctctacccaccctaaatgccacca 34716164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10607351 - 10607392
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    ||||||||||||| |||||  |||||||||||||||||||||    
T  10607351 catggtgggaaagtattccctctacccaccctaaatgccacc 10607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 29382847 - 29382888
Alignment:
Q  30 catggtgggaaagaattcctcctacccaccctaaatgccacc 71  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  29382847 catggtggaaaagtcttcctcctacccaccctaaatgccacc 29382888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 12841 - 12877
Alignment:
Q  5 atctaatggtcaattttaactttcccatggtgggaaa 41  Q
    |||||||||||||  ||||||||||||||||||||||    
T  12841 atctaatggtcaaaattaactttcccatggtgggaaa 12877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11896 - 11932
Alignment:
Q  1 cttaatctaatggtcaattttaactttcccatggtgg 37  Q
    |||||||||||||||||  ||||||||||||||||||    
T  11896 cttaatctaatggtcaagattaactttcccatggtgg 11932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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