View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_high_23 (Length: 279)
Name: NF8214_high_23
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 33510568 - 33510471
Alignment:
| Q |
164 |
gtgaaggaactatctgctaactgtagcatgaatattcaacccatgaccattgtgggacacaccaacttatataatgcagaaaggaagcaacaaatata |
261 |
Q |
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| T |
33510568 |
gtgaaggaactatctgctaactgtagcatgaatattcaacccataaccattgtgggacacaccaacttatataatgcagaaaggaagcaacaaatata |
33510471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 33614811 - 33614756
Alignment:
| Q |
28 |
tttggtgttccatttttacccatgtattcatatttcatttatgatttatttttctg |
83 |
Q |
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| T |
33614811 |
tttggtgttccatttttacccatgtattcatatttcatttatgatttatttttctg |
33614756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 22644486 - 22644433
Alignment:
| Q |
28 |
tttggtgttccatttttacccatgtattcatatttcatttatgatttatttttc |
81 |
Q |
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| T |
22644486 |
tttggtgttccatttttacccttgtattcatatttcatttatgatttatttttc |
22644433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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