View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8214_high_37 (Length: 208)

Name: NF8214_high_37
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8214_high_37
NF8214_high_37
[»] chr7 (14 HSPs)
chr7 (92-193)||(35255835-35255934)
chr7 (32-92)||(46576241-46576301)
chr7 (32-93)||(33496622-33496683)
chr7 (32-92)||(30922709-30922769)
chr7 (32-90)||(52060-52118)
chr7 (32-87)||(48460775-48460830)
chr7 (32-92)||(38349458-38349519)
chr7 (43-93)||(28713811-28713861)
chr7 (51-89)||(43659258-43659296)
chr7 (32-92)||(31741155-31741216)
chr7 (47-91)||(42974395-42974439)
chr7 (32-91)||(38754897-38754956)
chr7 (5-39)||(30922772-30922806)
chr7 (43-89)||(37536317-37536363)
[»] chr2 (16 HSPs)
chr2 (32-98)||(14242517-14242583)
chr2 (32-95)||(32599244-32599307)
chr2 (32-96)||(13696960-13697024)
chr2 (32-91)||(17823702-17823761)
chr2 (33-92)||(33555361-33555420)
chr2 (32-96)||(36272656-36272720)
chr2 (33-92)||(36709191-36709250)
chr2 (33-91)||(4434592-4434650)
chr2 (32-95)||(40216531-40216595)
chr2 (53-91)||(23860198-23860236)
chr2 (32-91)||(3121722-3121782)
chr2 (32-92)||(40095386-40095445)
chr2 (56-91)||(42061237-42061272)
chr2 (32-92)||(14945735-14945796)
chr2 (43-88)||(24475714-24475759)
chr2 (32-96)||(33300093-33300158)
[»] chr5 (10 HSPs)
chr5 (32-95)||(13988370-13988433)
chr5 (2-92)||(11247275-11247375)
chr5 (32-93)||(36890499-36890560)
chr5 (35-92)||(12248398-12248456)
chr5 (32-92)||(8076377-8076438)
chr5 (43-91)||(43100208-43100256)
chr5 (32-92)||(15285441-15285502)
chr5 (32-92)||(20151497-20151557)
chr5 (32-91)||(1447748-1447806)
chr5 (32-88)||(35906106-35906163)
[»] chr8 (8 HSPs)
chr8 (32-93)||(14342185-14342246)
chr8 (32-92)||(4076768-4076828)
chr8 (32-94)||(1993636-1993698)
chr8 (32-91)||(11904975-11905035)
chr8 (32-92)||(43065904-43065964)
chr8 (32-92)||(35200678-35200739)
chr8 (5-39)||(43065967-43066001)
chr8 (42-91)||(28898118-28898167)
[»] chr4 (25 HSPs)
chr4 (19-92)||(5208412-5208485)
chr4 (32-93)||(17044125-17044186)
chr4 (32-91)||(37605691-37605750)
chr4 (33-93)||(55281332-55281392)
chr4 (32-91)||(25164471-25164530)
chr4 (32-91)||(45995895-45995954)
chr4 (32-91)||(3287202-3287262)
chr4 (32-92)||(39631009-39631069)
chr4 (32-95)||(43749217-43749280)
chr4 (43-93)||(51293080-51293130)
chr4 (5-87)||(53456316-53456398)
chr4 (32-92)||(24059134-24059194)
chr4 (32-100)||(51579703-51579771)
chr4 (35-92)||(14149959-14150017)
chr4 (32-96)||(42179144-42179209)
chr4 (32-91)||(48525448-48525508)
chr4 (37-91)||(5817380-5817434)
chr4 (54-92)||(20107233-20107271)
chr4 (5-39)||(25164533-25164567)
chr4 (5-39)||(45995957-45995991)
chr4 (32-92)||(22364470-22364531)
chr4 (32-92)||(25783908-25783968)
chr4 (32-87)||(32290321-32290377)
chr4 (12-91)||(40309282-40309362)
chr4 (12-91)||(40328823-40328903)
[»] chr1 (21 HSPs)
chr1 (32-97)||(40030909-40030974)
chr1 (32-92)||(1995075-1995135)
chr1 (35-94)||(27325624-27325683)
chr1 (32-92)||(2402924-2402984)
chr1 (32-92)||(32267464-32267524)
chr1 (32-92)||(44797466-44797526)
chr1 (32-93)||(15066018-15066080)
chr1 (32-96)||(13276469-13276534)
chr1 (32-95)||(47571559-47571623)
chr1 (44-90)||(29637211-29637257)
chr1 (32-92)||(526908-526969)
chr1 (32-83)||(1673492-1673543)
chr1 (32-90)||(29731310-29731369)
chr1 (41-92)||(39858469-39858520)
chr1 (41-92)||(49430483-49430534)
chr1 (32-92)||(19989359-19989419)
chr1 (31-79)||(26041092-26041141)
chr1 (57-94)||(40314230-40314267)
chr1 (32-96)||(46845661-46845726)
chr1 (7-39)||(44797529-44797561)
chr1 (35-90)||(48489574-48489630)
[»] chr6 (9 HSPs)
chr6 (32-93)||(9045955-9046016)
chr6 (32-91)||(34792651-34792710)
chr6 (32-92)||(14313986-14314045)
chr6 (35-91)||(16718122-16718179)
chr6 (32-92)||(1244555-1244615)
chr6 (32-92)||(12748334-12748395)
chr6 (32-92)||(23916084-23916145)
chr6 (45-92)||(9521811-9521858)
chr6 (3-39)||(34792713-34792749)
[»] scaffold0933 (1 HSPs)
scaffold0933 (32-92)||(3055-3115)
[»] chr3 (10 HSPs)
chr3 (32-96)||(48034803-48034867)
chr3 (32-89)||(8496830-8496887)
chr3 (32-91)||(38247921-38247979)
chr3 (32-95)||(12224000-12224062)
chr3 (32-98)||(23004877-23004944)
chr3 (32-92)||(9271235-9271295)
chr3 (32-94)||(46135647-46135710)
chr3 (32-91)||(50989326-50989385)
chr3 (32-91)||(51092458-51092517)
chr3 (43-91)||(36674519-36674567)
[»] scaffold0533 (2 HSPs)
scaffold0533 (32-91)||(10232-10290)
scaffold0533 (5-40)||(10292-10327)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 35255835 - 35255934
Alignment:
Q  92 taaaattttcaaggtcaattcaatttaaaaaattatcataaaaatacacatattttcatgaattattataaccaactaatatggtatatacaccaaatta 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  35255835 taaaattttcaaggttaattcaatttaaaaaattatcataaaaatacacatattttcatgaattattataaccaactaatatgg--tatacaccaaatta 35255932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 46576301 - 46576241
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46576301 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 46576241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 33496622 - 33496683
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  33496622 ctctcacatggagtggtataatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 33496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 30922769 - 30922709
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30922769 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcct 30922709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 52060 - 52118
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatc 90  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52060 ctctcatatgtagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatc 52118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 48460775 - 48460830
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacatt 87  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  48460775 ctctcacatggagtggtacaatgtgtgtgtggaaaaaagtgtgtacataaaacatt 48460830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 38349519 - 38349458
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  38349519 ctctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 38349458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 28713811 - 28713861
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    ||||||||||| ||||||| || ||||| ||||||||||||||||||||||    
T  28713811 agtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatccta 28713861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 43659258 - 43659296
Alignment:
Q  51 aatgtgtgtatggaaaaaagtgtgttcatgaaacattat 89  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  43659258 aatgtgtgtatggaaaaaagggtgttcatgaaacattat 43659296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 31741155 - 31741216
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||| |||||||||  |||||||| ||||||||  ||||||||||||||||||||    
T  31741155 ctctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcct 31741216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 42974439 - 42974395
Alignment:
Q  47 gtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||    
T  42974439 gtacaatgtgtgtatggaaacaaaggtgttcatgaaacattatcc 42974395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 38754956 - 38754897
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||| |||||| ||||| |||||||||||||  |||| ||||||| |||||||    
T  38754956 ctctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 30922806 - 30922772
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcaca 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  30922806 acacacaaaaaaactcacatgtattgtctctcaca 30922772  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 37536363 - 37536317
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattat 89  Q
    ||||||||||||||||||| || ||||  ||||||||||||||||||    
T  37536363 agtggtacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 14242583 - 14242517
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14242583 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctaaaatt 14242517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 32599307 - 32599244
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32599307 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctaaa 32599244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 13697024 - 13696960
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  13697024 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccaaaaa 13696960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 17823702 - 17823761
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17823702 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 33555420 - 33555361
Alignment:
Q  33 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33555420 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 33555361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 36272720 - 36272656
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  36272720 ctctcacatggagtggtacaatgtgtatatggaaaaaagtgtgtacatgaaacattatccaaaaa 36272656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 36709250 - 36709191
Alignment:
Q  33 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  36709250 tctcatatggagtggtacaatgtttgtatggaaaaaaatgtgtacatgaaacattatcct 36709191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 4434650 - 4434592
Alignment:
Q  33 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4434650 tctcacatgaggtggtacaatgtgtgtatggaaaaaatagtgttcatgaaacattatcc 4434592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 40216531 - 40216595
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    |||||||||||| |||||||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  40216531 ctctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcctaaa 40216595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 23860236 - 23860198
Alignment:
Q  53 tgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23860236 tgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 23860198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 3121722 - 3121782
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||| |||||||||  ||||||||| | ||||| ||||||||||||||||||||    
T  3121722 ctctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcc 3121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 40095386 - 40095445
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||| ||| |||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  40095386 ctctcgcatagagtggtacagtgtatgtatggaaaaaa-tgtgtacatgaaacattatcct 40095445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 42061272 - 42061237
Alignment:
Q  56 gtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||| |||||||||||||||    
T  42061272 gtgtatggaaaaaagtgtgtacatgaaacattatcc 42061237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 14945796 - 14945735
Alignment:
Q  32 ctctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |||||||||||   |||||||| | ||||| |||||||||||||||||||||    
T  14945796 ctctcacataggagtggtacataatgtgtatgaagaaaagggtgttcatgaaacattatcct 14945735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 24475759 - 24475714
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacatta 88  Q
    |||||||||  ||||||||||| ||||| |||||||||||||||||    
T  24475759 agtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 33300093 - 33300158
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    ||||||||||| |||||||||  ||||||||| | || |  |||||||||||||||||||||||||    
T  33300093 ctctcacatgggagtggtacatagtgtgtatgaagaatacggtgttcatgaaacattatcctaaaa 33300158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 13988370 - 13988433
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13988370 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctaaa 13988433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 11247275 - 11247375
Alignment:
Q  2 cctacacacaaaaaagctcacatgtattgtctct----------cacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||| ||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11247275 cctacacacaaaaaaactcacatgtattgtctctcacacactctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 11247374  T
Q  92 t 92  Q
    |    
T  11247375 t 11247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 36890499 - 36890560
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36890499 ctctcacatcgagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 36890560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 12248398 - 12248456
Alignment:
Q  35 tcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||    
T  12248398 tcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 12248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 8076377 - 8076438
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||||||    
T  8076377 ctctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 43100256 - 43100208
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  43100256 agtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 15285441 - 15285502
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||| |||||||||  ||||||||| | ||||| |||||||||||||||||||||    
T  15285441 ctctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 15285502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 20151497 - 20151557
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||| |||||| ||||| |||||||||||||  |||| ||||||| ||||||||    
T  20151497 ctctcacatggggtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcct 20151557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 1447806 - 1447748
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||| |  |||||||| |||||||| |||||||| ||||||||||||||||||||    
T  1447806 ctctcacattggatggtacaacgtgtgtatagaaaaaag-gtgttcatgaaacattatcc 1447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 35906106 - 35906163
Alignment:
Q  32 ctctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacatta 88  Q
    |||||||||| ||||||||||  || |||||||| ||||| |||||||||||||||||    
T  35906106 ctctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 14342246 - 14342185
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14342246 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 14342185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 4076828 - 4076768
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  4076828 ctctcacatagagtggtacaatatgtgtatggaaaaaagtgtgtacatgaaacattatcct 4076768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 1993698 - 1993636
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaa 94  Q
    |||||||||| | |||||||||||||||||| |||||||||||| || |||||||||||||||    
T  1993698 ctctcacatgaaatggtacaatgtgtgtatgaaaaaaagtgtgtacacgaaacattatcctaa 1993636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 11904975 - 11905035
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||    
T  11904975 ctctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 43065964 - 43065904
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||| ||| ||||||||||||    
T  43065964 ctctcacatggaatggtacaatgtatgtatggaaaaaaatgtgtacataaaacattatcct 43065904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 35200678 - 35200739
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| |||||||||||||||||| || ||||| |||||||| ||||||||||||    
T  35200678 ctctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcct 35200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 43066001 - 43065967
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcaca 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  43066001 acacacaaaaaaactcacatgtattgtctctcaca 43065967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 28898118 - 28898167
Alignment:
Q  42 gagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||  ||||||||||| ||||  ||||||||||||||||||||    
T  28898118 gagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 5208412 - 5208485
Alignment:
Q  19 tcacatgtattgtctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||    
T  5208412 tcacatgtattgtctctcacatggagtggtacaatatgtgtatgaaaaaaagtgtgtacataaaacattatcct 5208485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 17044125 - 17044186
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17044125 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatccta 17044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 37605750 - 37605691
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37605750 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 37605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 55281332 - 55281392
Alignment:
Q  33 tctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  55281332 tctcacatggagtggtacaatgtatgtatggaaaaaagtgtgtacatgaaacattatccta 55281392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 25164530 - 25164471
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25164530 ctctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 25164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 45995954 - 45995895
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  45995954 ctctcacatggagtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 3287202 - 3287262
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatgg-aaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  3287202 ctctcacatggagtggtacaatgtgtgtatggaaaaaaagtgtgtacatgaaacattatcc 3287262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 39631069 - 39631009
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  39631069 ctctcacatagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcct 39631009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43749217 - 43749280
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    |||| ||||||||||||||||| | |||||| |||||||||||| |||||||||||||||||||    
T  43749217 ctcttacatggagtggtacaatatatgtatgaaaaaaagtgtgtacatgaaacattatcctaaa 43749280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 51293130 - 51293080
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  51293130 agtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatccta 51293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 53456398 - 53456316
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacatt 87  Q
    ||||||||||||  |||||| |  |||||||||||||| ||||||||||||||| | ||||||||| || |||||||||||||    
T  53456398 acacacaaaaaaaatcacattttatgtctctcacatggtgtggtacaatgtgtgcacggaaaaaagggttttcatgaaacatt 53456316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 24059194 - 24059134
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||| |||||| |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  24059194 ctcttacatggggtggtacaatgtgtgtatggaagaaagtgtgtacataaaacattatcct 24059134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 51579703 - 51579771
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaatttt 100  Q
    ||||||||||| ||||||||||||||||||| || ||||||| | ||| |||||||||||| |||||||    
T  51579703 ctctcacatggggtggtacaatgtgtgtatgaaagaaagtgtttacataaaacattatccttaaatttt 51579771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 14150017 - 14149959
Alignment:
Q  35 tcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||    
T  14150017 tcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 14149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 42179209 - 42179144
Alignment:
Q  32 ctctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    ||||||||| |||||||||||  ||||||||| |||||||  ||||||||||||||||||||||||    
T  42179209 ctctcacataggagtggtacatagtgtgtatgaaaaaaaggatgttcatgaaacattatcctaaaa 42179144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 48525448 - 48525508
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||||| |||||||||||||||||| ||  |||| ||||||||||||||||||||    
T  48525448 ctctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 5817434 - 5817380
Alignment:
Q  37 acatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||| ||||||||||||||||||||| |||||  ||| |||||||||||||||    
T  5817434 acatggggtggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 20107233 - 20107271
Alignment:
Q  54 gtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  20107233 gtgtgtatgaaaaaaagggtgttcatgaaacattatcct 20107271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 25164567 - 25164533
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcaca 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  25164567 acacacaaaaaaactcacatgtattgtctctcaca 25164533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 45995991 - 45995957
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcaca 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  45995991 acacacaaaaaaactcacatgtattgtctctcaca 45995957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 22364531 - 22364470
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||| |||||||||   | |||||||| ||||| |||||||||||||||||||||    
T  22364531 ctctcacatgggagtggtacataatatgtatggagaaaagggtgttcatgaaacattatcct 22364470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 25783968 - 25783908
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||| |  |||||||| |||||||| |||||||   ||||||||||||||||||||    
T  25783968 ctctcacataggatggtacaacgtgtgtatagaaaaaaagatgttcatgaaacattatcct 25783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 32290321 - 32290377
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacatt 87  Q
    ||||||||||| |||||||||  || |||||||| ||||| ||||||||||||||||    
T  32290321 ctctcacatgggagtggtacatagtatgtatggagaaaagagtgttcatgaaacatt 32290377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 40309362 - 40309282
Alignment:
Q  12 aaaaagctcacatgtattgtctctcacatggag-tggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||| ||| ||| |||||||| |||||||| | |||||||||||||||||| | ||||| || |  ||||||||||||||    
T  40309362 aaaaaactcgcatttattgtctttcacatggggatggtacaatgtgtgtatgaagaaaagggtatctatgaaacattatcc 40309282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 40328903 - 40328823
Alignment:
Q  12 aaaaagctcacatgtattgtctctcacatggag-tggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||| ||| ||| |||||||| |||||||| | |||||||||||||||||| | ||||| || |  ||||||||||||||    
T  40328903 aaaaaactcgcatttattgtctttcacatggggatggtacaatgtgtgtatgaagaaaagggtatctatgaaacattatcc 40328823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 40030909 - 40030974
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaat 97  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  40030909 ctctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatcctaaaat 40030974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 1995075 - 1995135
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1995075 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 1995135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 27325683 - 27325624
Alignment:
Q  35 tcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27325683 tcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcctaa 27325624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 2402984 - 2402924
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2402984 ctctcacatggaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcct 2402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 32267524 - 32267464
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  32267524 ctctcacatggagtagtacaatgtgtgtatggaaaaaagtgtgtacatgaaatattatcct 32267464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 44797526 - 44797466
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  44797526 ctctcacatgaagtggtacaatgtgtgtatagaaaaaagtgtgtacatgaaacattatcct 44797466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 15066080 - 15066018
Alignment:
Q  32 ctctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    |||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  15066080 ctctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatccta 15066018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 13276534 - 13276469
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    ||||||||||| |||||||||  ||||||||||| ||||| |||||||||||||||||||||||||    
T  13276534 ctctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcctaaaa 13276469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 47571623 - 47571559
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    |||||||||||| |||||||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  47571623 ctctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcctaaa 47571559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 29637257 - 29637211
Alignment:
Q  44 gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatc 90  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  29637257 gtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatc 29637211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 526969 - 526908
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| ||||||||  ||||||||||| ||||| |||||||||||||||||||||    
T  526969 ctctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 526908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 1673492 - 1673543
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaa 83  Q
    |||| ||||| | ||||||||||||||||||||||||||||||| |||||||    
T  1673492 ctcttacatgaaatggtacaatgtgtgtatggaaaaaagtgtgtacatgaaa 1673543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 29731310 - 29731369
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatc 90  Q
    |||||||||||| ||| |||||||||||||| || ||||| |||||||||||||||||||    
T  29731310 ctctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 39858469 - 39858520
Alignment:
Q  41 ggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||||||    
T  39858469 ggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcct 39858520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 49430534 - 49430483
Alignment:
Q  41 ggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||  ||||||||||| ||||| |||||||||||| ||||||||    
T  49430534 ggagtggtacatagtgtgtatggagaaaagagtgttcatgaaatattatcct 49430483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 19989359 - 19989419
Alignment:
Q  32 ctctcacatg-gagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||| |||||||||||||||||||| || ||||| ||||  |||||||||||||||    
T  19989359 ctctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcct 19989419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 26041092 - 26041141
Alignment:
Q  31 tctctcacatggag-tggtacaatgtgtgtatggaaaaaagtgtgttcat 79  Q
    |||||||||| ||| |||||||||||||||||||| ||||| ||||||||    
T  26041092 tctctcacatagaggtggtacaatgtgtgtatggagaaaagggtgttcat 26041141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 40314230 - 40314267
Alignment:
Q  57 tgtatggaaaaaagtgtgttcatgaaacattatcctaa 94  Q
    |||||||||||||  |||||||||||||||||||||||    
T  40314230 tgtatggaaaaaatggtgttcatgaaacattatcctaa 40314267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 46845726 - 46845661
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    ||||||||||| |||||||||   |||||||| | ||||| |||||||||||||||||||| ||||    
T  46845726 ctctcacatgggagtggtacataatgtgtatgcagaaaagggtgttcatgaaacattatcccaaaa 46845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 44797561 - 44797529
Alignment:
Q  7 acacaaaaaagctcacatgtattgtctctcaca 39  Q
    |||||||||| ||||||||||||||||||||||    
T  44797561 acacaaaaaaactcacatgtattgtctctcaca 44797529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 48489574 - 48489630
Alignment:
Q  35 tcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatc 90  Q
    ||||||||| |||||||||||| ||||| || ||||  |||||||||||||||||||    
T  48489574 tcacatggaagtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 9045955 - 9046016
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatccta 93  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  9045955 ctctcacatggagtggtacaatgtgtgtatgaaaaaaagtgtgtacatgaaacattatccta 9046016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 34792710 - 34792651
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  34792710 ctctcacatggagtggtacaatgtgtgtatgcaaaaaagtgtgtacatgaaacattatcc 34792651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 14314045 - 14313986
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||  |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  14314045 ctctcacataaagtggtacaatgtgtgtatgga-aaaagtgtgtacatgaaacattatcct 14313986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 16718122 - 16718179
Alignment:
Q  35 tcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||    
T  16718122 tcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 1244615 - 1244555
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||| ||| ||| |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  1244615 ctctcatatgaagtagtacaatgtgtgtatgaaaaaaaatgtgtacatgaaacattatcct 1244555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 12748334 - 12748395
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||| ||||||||||||||||||  | ||||| ||||| |||||||||||||||    
T  12748334 ctctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcct 12748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 23916084 - 23916145
Alignment:
Q  32 ctctcacatgg-agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||| |||||||||  ||||||||| | ||||| |||||||||||||||||||||    
T  23916084 ctctcacatgggagtggtacatagtgtgtatgcagaaaagggtgttcatgaaacattatcct 23916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 9521858 - 9521811
Alignment:
Q  45 tggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||||||||||||||||||| |||||  ||| ||||||||||||||||    
T  9521858 tggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcct 9521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34792749 - 34792713
Alignment:
Q  3 ctacacacaaaaaagctcacatgtattgtctctcaca 39  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  34792749 ctacacacacaaaaactcacatgtattgtctctcaca 34792713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 3115 - 3055
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  3115 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgtatatgaaacattatcct 3055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 48034867 - 48034803
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaa 96  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  48034867 ctctcacatgaagtggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatccaaaaa 48034803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 8496830 - 8496887
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattat 89  Q
    |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  8496830 ctctcacatggagtggtagaatgtgtgtatgaaaaaaagtgtgtgcatgaaacattat 8496887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 38247921 - 38247979
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  38247921 ctctcacatagagtggtacaatgtgtgtatgg-aaaaagtgtgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 12224062 - 12224000
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaa 95  Q
    ||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  12224062 ctctcacctgaagtggtacaa-gtgtgtatggaaaaaagtgtgtacatgaaacattattctaaa 12224000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 23004877 - 23004944
Alignment:
Q  32 ctctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaaaatt 98  Q
    |||||||||||| ||||| ||  ||||||||||| ||||| |||||||||||||||||||||||||||    
T  23004877 ctctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatcctaaaatt 23004944  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 9271235 - 9271295
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcct 92  Q
    |||| ||||| ||||||||||| | |||||| |||||||||||| ||||||||||||||||    
T  9271235 ctcttacatgaagtggtacaatatatgtatgaaaaaaagtgtgtacatgaaacattatcct 9271295  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 46135647 - 46135710
Alignment:
Q  32 ctctcacat-ggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcctaa 94  Q
    ||||||||| || ||||||||||||||||||||| ||||   ||||||||||||||||||||||    
T  46135647 ctctcacataggggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatcctaa 46135710  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 50989326 - 50989385
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||| ||||||| |||||||||||  |||||| ||||| |||||||||||||||    
T  50989326 ctctcacatgaagtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 50989385  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 51092458 - 51092517
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    |||||||||| ||||||| |||||||||||  |||||| ||||| |||||||||||||||    
T  51092458 ctctcacatgaagtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 51092517  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 36674567 - 36674519
Alignment:
Q  43 agtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||| || |||||  |||||||||||||| ||||    
T  36674567 agtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

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Target: scaffold0533 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 10290 - 10232
Alignment:
Q  32 ctctcacatggagtggtacaatgtgtgtatggaaaaaagtgtgttcatgaaacattatcc 91  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||    
T  10290 ctctcacatggagtggtacaatgtgtgtatgga-aaaagtgcgtacatgaaacattatcc 10232  T

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Target: scaffold0533; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 10327 - 10292
Alignment:
Q  5 acacacaaaaaagctcacatgtattgtctctcacat 40  Q
    |||||||||||| |||||||||||||||||||||||    
T  10327 acacacaaaaaaactcacatgtattgtctctcacat 10292  T

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