View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_high_8 (Length: 422)
Name: NF8214_high_8
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 14 - 400
Target Start/End: Complemental strand, 9245702 - 9245314
Alignment:
| Q |
14 |
acgaaatgtgggttggtttcattgattgactaattgaaactatttcaacttaataataatctaagttgttagtaggagatggacaaatgctcaagttgac |
113 |
Q |
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| T |
9245702 |
acgaaatgcgggtgggtttcattgattgactaattgaaactatttcaacttaataataatctaagttgttagtagaagatggacaaatgctcaagttgac |
9245603 |
T |
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| Q |
114 |
gaataagggtcaatcaaattaagaacatccgtaaacgagttagacaaatatttctcaagtcttctaagttccacgaaggtcgtaagggtgtcaaattcat |
213 |
Q |
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| T |
9245602 |
gaataagggtcaatcaaattaagaacatccgtaaacgagttagacaaatatttctcaagtcttctaagttccacgaaggtcgtaagggtgtcaaattcat |
9245503 |
T |
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| Q |
214 |
tcaaaggacacgtggaactgataattcagcagcaaaaattcatgttcattattgattttagctcc--gcattgaaaacaactatatttttggagcatgat |
311 |
Q |
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| T |
9245502 |
tcaaaggacacgtggaattgataattcaacagcaaaaattcatgttcattattgattttagctccatgcattgaaaacaactatattttcggagcatgat |
9245403 |
T |
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| Q |
312 |
gaaagaatgtgtgtataagagaaatggaaatggaaatagaaacgttgtaaaacaggagaatccaagtaaaatatgagacctcacgtaca |
400 |
Q |
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| T |
9245402 |
gaaagaatgtgtgtataagagaaatggaaatggaaatagaaacgttgtaaaataggagaatccaagtcaaatatgagacctcacgtaca |
9245314 |
T |
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