View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_11 (Length: 412)
Name: NF8214_low_11
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_11 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 77005 - 76667
Alignment:
| Q |
13 |
acagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaattaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77005 |
acagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaattaaa |
76906 |
T |
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| Q |
113 |
cactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagtatatagccttacaaaaactgaaa |
212 |
Q |
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| T |
76905 |
cactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagtatataaccttacaaaaactgaaa |
76810 |
T |
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| Q |
213 |
ttcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataagatccatatacaccatttcaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
76809 |
ttcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataagatccatgtacaccatttcaact |
76710 |
T |
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| Q |
313 |
cacttgttgaaaaatgtagctagaaaaacaaaaattagtatat |
355 |
Q |
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| T |
76709 |
cacttattgaaaaatgtagctagaaaaacaaaaattagtatat |
76667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 398
Target Start/End: Complemental strand, 76643 - 76608
Alignment:
| Q |
363 |
ataatatatacataccaattcattgccaaggttcat |
398 |
Q |
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| T |
76643 |
ataatatatacataccaattcattgccaaggttcat |
76608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 40889279 - 40889617
Alignment:
| Q |
13 |
acagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaattaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40889279 |
acagacagcattttttagtccgtacaaatgtttggttcagagtgatgcttaactaaaaaccttaatatgaaacaaaaatggagattccaatttaattaaa |
40889378 |
T |
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| Q |
113 |
cactttaattaatgtttttgggcttaatgtatgtatatgatggaatgnnnnnnncaattcatgaccaaatacagagtatatagccttacaaaaactgaaa |
212 |
Q |
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| T |
40889379 |
cactttaattaatgtttttgggcttaatgtat----atgatggaatgaaaaaaacaattcatgaccaaatacagagtatataaccttacaaaaactgaaa |
40889474 |
T |
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| Q |
213 |
ttcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaatttttatgaatattctcataagatccatatacaccatttcaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40889475 |
ttcactatagaagcagaataataaagatgtcatgtcacatcataaagttagtttaacttttatgaatattctcataagatccatgtacaccatttcaact |
40889574 |
T |
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| Q |
313 |
cacttgttgaaaaatgtagctagaaaaacaaaaattagtatat |
355 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40889575 |
cacttattgaaaaatgtagctagaaaaacaaaaattagtatat |
40889617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 398
Target Start/End: Original strand, 40889641 - 40889676
Alignment:
| Q |
363 |
ataatatatacataccaattcattgccaaggttcat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40889641 |
ataatatatacataccaattcattgccaaggttcat |
40889676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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