View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8214_low_12 (Length: 411)
Name: NF8214_low_12
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_12 |
 | |
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| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 33638171 - 33637794
Alignment:
| Q |
8 |
ttggtgttgtgaaaaagtgacttaatgcattagtttaagcacatacagttaatatctttggattaatttctctatttaatatatgataggtggtggttgt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33638171 |
ttggtgttgtgaaaaagtgatttaatgcattagtttaagcacatacagttactatcttcggattaatttttctatttaatatatgataggtggtggttgt |
33638072 |
T |
|
| Q |
108 |
gttttgggattgtacaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33638071 |
gttttgggattgtacaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattcta |
33637972 |
T |
|
| Q |
208 |
cttggaggcactctcgttggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttacca |
307 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637971 |
cttggaggcactctcgttggacaattcgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttacca |
33637872 |
T |
|
| Q |
308 |
tcaaccaattagtgattttatcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637871 |
tcaaccaattagtgattttatcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttg |
33637794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 128 - 393
Target Start/End: Original strand, 29124533 - 29124798
Alignment:
| Q |
128 |
agaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttgg |
227 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
29124533 |
agaaatgggaagggagagttcattgcatgggtgaaagttgttggagaaagactcttgcttgccctgattttccaattctaccaaaaggcactcttgttgg |
29124632 |
T |
|
| Q |
228 |
accatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgatttta |
327 |
Q |
| |
|
||||| ||||||||||||| |||| | |||||||||||| | | |||||||||||||| || ||| ||||||||||| || | || ||| | |||||| |
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|
| T |
29124633 |
accattcgtgaatggtagtattaactagttagcacgtcatagcttaaattgtcatatgaatgaattgaaaaatgttattgtcgatcagttaataatttta |
29124732 |
T |
|
| Q |
328 |
tcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgccc |
393 |
Q |
| |
|
|| ||||||||||| ||||||| |||||||||||| |||| || |||||||| ||||| ||||| |
|
|
| T |
29124733 |
tcacttgatatgcggctggaggcatgtaagtatatgttgttgtctaatggttttattgaaatgccc |
29124798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 161 - 393
Target Start/End: Original strand, 31669440 - 31669669
Alignment:
| Q |
161 |
atagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgtgaatggtagtgttaattggttagc |
260 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||| |||| || | || | |||||||||| ||||||||||||| |||| | |||||| |
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|
| T |
31669440 |
atagatgttggagaaagacttttgcttgccctgattttccaattttactaaaagacgcttttgttggaccattcgtgaatggtagtattaacttgttagc |
31669539 |
T |
|
| Q |
261 |
acgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcggatggaggcgtgtaagtat |
360 |
Q |
| |
|
|| ||| | | |||||| |||||| || ||| ||||||||| | || |||| ||||| ||||||||| |||||||| |||| || | | ||||||| |
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|
| T |
31669540 |
acatcatagcttaaatttccatatgaatgaatttcaaaatgttatcgtcgaccacttagtaattttatcgcttgatatgaagatgaagacatataagtat |
31669639 |
T |
|
| Q |
361 |
atgatgttacctgatggttttgttgaagtgccc |
393 |
Q |
| |
|
||| || ||| |||||||||||||| ||||| |
|
|
| T |
31669640 |
atgctg---cctaatggttttgttgaaatgccc |
31669669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 326
Target Start/End: Complemental strand, 40794526 - 40794307
Alignment:
| Q |
103 |
gttgtgttttgggattgtacaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaa |
202 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| ||||||||||||| |||| ||||| ||||||| || |||||||||| ||| ||||| | ||||||| |
|
|
| T |
40794526 |
gttgtcttttgggatcatacaacacataaaatggaggggagggtttattgtatggg-gatagttcttagagaaagactcttgattgccttacttttccat |
40794428 |
T |
|
| Q |
203 |
ttctacttggaggcactctcgttggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgt |
302 |
Q |
| |
|
|||||| | | ||| | |||||||| | || | ||||||||||| | |||||||| ||||||| |||| || || ||||||||| ||||||| |
|
|
| T |
40794427 |
ttctac---catgaacttccaatggaccattcatgtacggtagtgttaactagttagcacttcacaacttaaacagtaatgattataaatgggaaaatgt |
40794331 |
T |
|
| Q |
303 |
taccatcaaccaattagtgatttt |
326 |
Q |
| |
|
||||||| | ||||||||| |||| |
|
|
| T |
40794330 |
taccatccaacaattagtggtttt |
40794307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 37 - 362
Target Start/End: Original strand, 3837485 - 3837810
Alignment:
| Q |
37 |
ttagtttaagcacatacagttaatatctttggattaatttctctatttaatatatgataggtggtggttgtgttttgggattgtacaacacagaaatggg |
136 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||||||| | || ||||||| | |||||||||| |||||| | |||| || || |
|
|
| T |
3837485 |
ttagtttaagcacatacttttaatctttttggattaatttctctatttactccattctaggtggcagctgtgttttggaattgtatagcacaaaagatgg |
3837584 |
T |
|
| Q |
137 |
aggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgt |
236 |
Q |
| |
|
||| || |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||| |||| | | ||| |||||||||||| ||| |
|
|
| T |
3837585 |
aggcgaaagttcattgcatgggcgatagttcttggagaaatactcttgcttgccatgattttccaattttactacaaaggactatcgttggaccattcgt |
3837684 |
T |
|
| Q |
237 |
gaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgat |
336 |
Q |
| |
|
||||||||||||||| |||||| | ||| ||| ||||||||||| ||||| || || ||||||||||||||||||| ||| ||||||| ||| ||||| |
|
|
| T |
3837685 |
gaatggtagtgttaactggttaacgtatcataacttaaattgtcatttgtatgaaagggaaaatgttaccatcaaccagttattgattttttcgcttgat |
3837784 |
T |
|
| Q |
337 |
atgcggatggaggcgtgtaagtatat |
362 |
Q |
| |
|
|||| | |||||| ||||||||||| |
|
|
| T |
3837785 |
ttgcgaaaggaggcatgtaagtatat |
3837810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 37 - 362
Target Start/End: Original strand, 12966 - 13291
Alignment:
| Q |
37 |
ttagtttaagcacatacagttaatatctttggattaatttctctatttaatatatgataggtggtggttgtgttttgggattgtacaacacagaaatggg |
136 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||||||| | || |||||||| | |||||||||| |||||| | |||| || || |
|
|
| T |
12966 |
ttagtttaagcacatacttttaatctttttggattaatttctctatttactccattctaggtggtagctgtgttttggaattgtatagcacaaaagatgg |
13065 |
T |
|
| Q |
137 |
aggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactctcgttggaccatccgt |
236 |
Q |
| |
|
||| || |||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||| |||| | | ||| |||||||||||| | |
|
|
| T |
13066 |
aggcgaaagttcattgcatgggcgatagttcttggagaaatactcttgcttgccatgattttccaattttactacaaaggactatcgttggaccatttct |
13165 |
T |
|
| Q |
237 |
gaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagtgattttatcgtttgat |
336 |
Q |
| |
|
||||||||||||||| |||||| | ||| ||| ||||||||||| ||||| || || ||||||||||||| ||||| ||| ||||||| ||| ||||| |
|
|
| T |
13166 |
gaatggtagtgttaactggttaacgtatcataacttaaattgtcatttgtatgaaagggaaaatgttaccattaaccagttattgattttttcgcttgat |
13265 |
T |
|
| Q |
337 |
atgcggatggaggcgtgtaagtatat |
362 |
Q |
| |
|
|||| | |||| | ||||||||||| |
|
|
| T |
13266 |
ttgcgaaaggagacatgtaagtatat |
13291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 121 - 393
Target Start/End: Complemental strand, 13784767 - 13784498
Alignment:
| Q |
121 |
acaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactc |
220 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||| || ||| |
|
|
| T |
13784767 |
acaacacataaaatggaggggagagttcattgtatgggtgatagttgttggagaaagactatcgattgccctacttttccaattctactacga---actt |
13784671 |
T |
|
| Q |
221 |
tcgttggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttaccatcaaccaattagt |
320 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||||||||| ||||||| |||| || || ||||||||| ||||| |||| ||| | |||||||| |
|
|
| T |
13784670 |
ccaatggaccattcgtgaatggtagtgttaactggttagcacttcacaacttaaacagtgatgattataaatgggaaaatattactatccaacaattagt |
13784571 |
T |
|
| Q |
321 |
gattttatcgtttgatatgcggatggaggcgtgtaagtatatgatgttacctgatggttttgttgaagtgccc |
393 |
Q |
| |
|
| |||| || ||||| |||||| |||| ||||||||||| || | ||||||||||||| ||| |||||| |
|
|
| T |
13784570 |
ggttttttcacttgatctgcggaaggagaaatgtaagtatattttgctgcctgatggttttggtgaggtgccc |
13784498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 95 - 362
Target Start/End: Complemental strand, 34456 - 34192
Alignment:
| Q |
95 |
aggtggtggttgtgttttgggattgtacaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctga |
194 |
Q |
| |
|
||||||| | ||| ||||||||| || |||||| ||| ||||||||| ||||| || ||||| ||||||||||||||||||||| | | ||||||| |
|
|
| T |
34456 |
aggtggtagctgtcttttgggatcataaaacacataaaatggaggggagagttcactgtatgggtgatagttgttggagaaagactctcgattgccctac |
34357 |
T |
|
| Q |
195 |
ttttccaattctacttggaggcactctcgttggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatgg |
294 |
Q |
| |
|
||||||||||||||| || | | | |||||||| ||||||||| |||||||| |||||||||| ||||||| |||| || || ||||||||| |
|
|
| T |
34356 |
ttttccaattctactacga---atttccaatggaccattcgtgaatggcagtgttaactggttagcacttcacaacttaaacagtgatgattataaatgg |
34260 |
T |
|
| Q |
295 |
aaaaatgttaccatcaaccaattagtgattttatcgtttgatatgcggatggaggcgtgtaagtatat |
362 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| || ||||| |||||| |||| | ||||||||||| |
|
|
| T |
34259 |
gaaaatgttaccatccaacaattagtggttttttcacttgatctgcggaaggagacatgtaagtatat |
34192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 306
Target Start/End: Complemental strand, 29418 - 29236
Alignment:
| Q |
121 |
acaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattctacttggaggcactc |
220 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||| ||| | ||||||||||||||||||||| | ||||||| ||||||||||||||| || ||| |
|
|
| T |
29418 |
acaacacataaaatggaggggagagttcattgtatgagtgatagttgttggagaaagactcccgattgccctacttttccaattctactacga---actt |
29322 |
T |
|
| Q |
221 |
tcgttggaccatccgtgaatggtagtgttaattggttagcacgtcacaacataaattgtcatatgtataaatggaaaaatgttacc |
306 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||||||||| ||| ||| |||| ||| ||| ||||||||| ||||||||||| |
|
|
| T |
29321 |
gcaatggaccattcgtgaatggtagtgttaactggttagcacttcaaaacgtaaactgtgataattataaatgggaaaatgttacc |
29236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 20476395 - 20476292
Alignment:
| Q |
106 |
gtgttttgggattgtacaacacagaaatgggaggggagggttcattgcatgggagatagttgttggagaaagactattgcttgccctgattttccaattc |
205 |
Q |
| |
|
||||||||||||| ||| |||||| || | | ||| |||||||||||||||| |||| ||||||||| |||| ||| | |||||| ||||||||||| |
|
|
| T |
20476395 |
gtgttttgggattctaccacacaggaaatgcaagggcgggttcattgcatgggtgataattgttggaggaagattatagtttgccccacttttccaattc |
20476296 |
T |
|
| Q |
206 |
tact |
209 |
Q |
| |
|
|||| |
|
|
| T |
20476295 |
tact |
20476292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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