View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_18 (Length: 349)
Name: NF8214_low_18
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 37249577 - 37249391
Alignment:
| Q |
14 |
ataatactatacaacaaagcaacgtcgcatttggttccctaagtgcagctcagctcaggtggtaaaatgttgtgggaacattcacatttgatatgttggg |
113 |
Q |
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| T |
37249577 |
ataatactatacaacaaagcaacgtcgcatttggttccctaagtgcagctcagctcaggtggtaaaatgttgtgggaacattcacatttgatatgttggg |
37249478 |
T |
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| Q |
114 |
cgcaaattcaaacccacaatacccctcttcaaacttagtgtatgtgattctccctaaaacactgtaattccgctattattcacatcg |
200 |
Q |
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| T |
37249477 |
cgcaaattcaaacccacaatacccctcttcaaacttagtgtatgtgattctccctaaaacactgtaattccgctattattcacatcg |
37249391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 332
Target Start/End: Complemental strand, 37249352 - 37249258
Alignment:
| Q |
238 |
cacccatcctttttaaaccatttctctannnnnnnacttttaattacaaataactacagaagtatctcatttgcttacgtcatgtttgttaattc |
332 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
37249352 |
cacccatcctttttaaatcatttctctatttttttacttttaattacaaataactacagaagtatcttatttgcttacatcatgtttgttaattc |
37249258 |
T |
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