View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_19 (Length: 346)
Name: NF8214_low_19
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 574751 - 575068
Alignment:
| Q |
18 |
actatgaaagctaattctcatcaaagtacctatgtaatgatgtaaatgcatcaaatctttaactctaagatcaagtaccatcatattaatagaagtatag |
117 |
Q |
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| T |
574751 |
actatgagagctaatgctcatcaaagtacctatgtaatgatgtaaatgcatcaaatctttaactctaagatcaagtaccatcatattgatagaagtatag |
574850 |
T |
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| Q |
118 |
aacaagttttcttcacatcctttatttacttatttatgtttattaggagacaaagattgcttgatggagtgcctttccatgatgtgacaaaccttctcca |
217 |
Q |
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| T |
574851 |
aacaagttttcttcacatcctttattaacttatttatgtttgttaggagacaaagattgcttgatggagtgcctttccatgatgtgacaaaccttctcca |
574950 |
T |
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| Q |
218 |
tcacaggaaggaaagattattcccatatgccaaagctaaaagtaacatttttccctttttacttttgtttcaatcatgagttatgtaagtcaccaaaaaa |
317 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
574951 |
tcacaggaaggaaagattattcccatttgccaaagctaaaagtaacatttttccctttttgcttttgtttcagtcatgagttatgta---caccaaaaaa |
575047 |
T |
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| Q |
318 |
tgaaaatcagctagtattatc |
338 |
Q |
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||||||||||||||||||||| |
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| T |
575048 |
tgaaaatcagctagtattatc |
575068 |
T |
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